Structural variant toolkit for VCFs
Toolkit for benchmarking, merging, and annotating Structural Variants
📚 WIKI page has detailed documentation.
📈 See Updates on new versions.
📝 Read our Papers (#1, #2) to learn more.
Truvari uses Python 3.6+ and can be installed with pip:
python3 -m pip install Truvari
For details and more installation options, see Installation on the wiki.
Each sub-command contains help documentation. Start with truvari -h
to see available commands.
The current most common Truvari use case is for structural variation benchmarking:
truvari bench -b base.vcf.gz -c comp.vcf.gz -o output_dir/
All documentation about Truvari is on the WIKI. Additional information about using Truvari can be found in Discussions