Official git repository for Biopython (originally converted from CVS)
DeepVariant is an analysis pipeline that uses a deep neural network to c...
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Official code repository for GATK versions 4 and up
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-r...
Data intensive science for everyone.
A collaboratively written review paper on deep learning, genomics, and p...
tools for working with genome variation graphs
ADAM is a genomics analysis platform with specialized file formats built...
Cloud-native genomic dataframes and batch computing
Scripts to download genomes from the NCBI FTP servers
Python and C++ code for reading and writing genomics data.
A comprehensive tutorial about GWAS and PRS
Python library to handle Gene Ontology (GO) terms
Python library to facilitate genome assembly, annotation, and comparativ...