Python library to facilitate genome assembly, annotation, and comparativ...
C++ library and cmdline tools for parsing and manipulating VCF files wi...
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Bayesian haplotype-based mutation calling
PEPPER-Margin-DeepVariant
Clair3 - Symphonizing pileup and full-alignment for high-performance lon...
Fast and accurate gene fusion detection from RNA-Seq data
A tool set for short variant discovery in genetic sequence data.
Viral genomics analysis pipelines
Clairvoyante: a multi-task convolutional deep neural network for variant...
Graph realignment tools for structural variants
GATK RNA-Seq Variant Calling in Nextflow
:floppy_disk: :page_with_curl: "Reads to report" for public health and c...
Long read production pipelines
De novo genome assembly and multisample variant calling