CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
De novo assembly based variant calling pipeline for Illumina short reads
Assembly and intrahost/low-frequency variant calling for viral samples
A handy variant calling pipeline generator for whole-genome sequencing (...
Clair: Exploring the limit of using deep neural network on pileup data f...
PacBio® variant and consensus caller
xHLA: Fast and accurate HLA typing from short read sequence data
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogra...
Genome inference from a population reference graph
High performance data storage for importing, querying and transforming v...
A method for variant graph genotyping based on exact alignment of k-mers
Toolkit for calling structural variants using short or long reads
Efficient variant-call data storage and retrieval library using the Tile...
Simple pileup-based variant caller
Call and score variants from WGS/WES of rare disease patients.