R toolkit for single cell genomics
Deep probabilistic analysis of single-cell and spatial omics data
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification f...
NicheNet: predict active ligand-target links between interacting cells
Spatial Single Cell Analysis in Python
DANCE: a deep learning library and benchmark platform for single-cell an...
CellRank: dynamics from multi-view single-cell data
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive ...
Table of software for the analysis of single-cell RNA-seq data.
Multi-subject Single Cell Deconvolution
R package for analyzing and interactively exploring large-scale single-c...
R package for the joint analysis of multiple single-cell RNA-seq datasets
Differential expression analysis for single-cell RNA-seq data.
Color blindness friendly visualization of single-cell and bulk RNA-seque...