Compare different differential abundance and expression methods
For analysis of microbiome and microbial community data
A fast and scalable phylogenetic tree viewer for microbiome data analysis
The Microbiome Interpretable Temporal Rule Engine
Sample search by metadata and features
Various functions for analysis of microbial community data
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
The is mostly a wrapper tool using phyloseq and microbiome R packages.
creating hybrid-gene phylogenetic trees for diversity analyses
exploratory and interactive microbiome analyses based on heatmaps