R package for microbiome data visualization and statistics. Uses phylose...
Python package to study microbial communities using metabolic modeling.
ganon2 classifies genomic sequences against large sets of references eff...
DeepMicrobes: taxonomic classification for metagenomics with deep learning
Inference of microbial interaction networks from large-scale heterogeneo...
The Microbiome Explorer provides methods to analyze and visualize microb...
Visualize microbiome data with black magic ggtree
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Rob...
Repository containing lists of all published ancient metagenomic (and r...
Cross-disease comparison of case-control gut microbiome studies
Archive: R functions for Analysis of Composition of Microbiomes (ANCOM)....
Histosketching Using Little Kmers
Emperor a tool for the analysis and visualization of large microbial eco...
Collection of commonly used RDP Tools for easy building
Compare different differential abundance and expression methods