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Virtual Tissue Simulator (VTS)

The primary vehicle for the accomplishment of these goals is the ongoing development of the Virtual Tissue Simulator (VTS). The VTS is being designed as a modular and scalable platform to provide an integrated suite of computational tools to define, solve, visualize, and analyze relevant forward and inverse radiative transport problems in Biomedical Optics. We intend to develop specific Application ToolKits (ATKs) that will provide a user-interface customized for the simulation of issues specific to an application domain. Examples include Small Animal Imaging and Fiber Optic Probe development.

Downloads and Latest Releases

To access the latest release, past releases and downloads, click here.

Getting Started and Documentation

To access getting started instructions in Linux, Mac or Windows, click

• Linux
• Mac
• Windows

For detailed instructions on how to launch the VTS GUI, click here.

Acknowledgement

Use the following citation or acknowledgement in publications or applications that make use of this open source software or underlying technology and research:

"We acknowledge open-source software resources offered by the Virtual Photonics Technology Initiative (https://virtualphotonics.org), at the Beckman Laser Institute, University of California, Irvine."

In addition, for any work that utilizes the Virtual Photonics Monte Carlo software, cite the following publication:

Carole K. Hayakawa, Lisa Malenfant, Janaka C. Ranasinghesagara, David J. Cuccia, Jerome Spanier, Vasan Venugopalan, "MCCL: an open-source software application for Monte Carlo simulations of radiative transport," J. Biomed. Opt. 27(8) 083005 (12 April 2022) https://doi.org/10.1117/1.JBO.27.8.083005

Software

For more information about coding conventions and how to contribute to our Open Source effort see our developer website

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Copyright

Virtual Tissue Simulator (VTS) Project.

Copyright ©2023 Virtual Photonics Technology Initiative.