Viv Versions Save

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

2 months ago

What's Changed

feat(loaders): Relax IFD and PlaneCount strictness in OME-XML by @manzt in https://github.com/hms-dbmi/viv/pull/783

Full Changelog: https://github.com/hms-dbmi/viv/compare/@hms-dbmi/[email protected]...@hms-dbmi/[email protected]

4 months ago

feat: Support multiscale multifile-OME-TIFFs (@vivjs/loaders) (#748)

This release extends Viv's multifile OME-TIFF data-loading capabilities to multiscale TIFFs as well. The loadOmeTiff utility now recognizes and loads multiresolution images described in a companion.ome metadata file.

  import { loadOmeTiff } from '@vivjs/loaders';

  let loader = await loadOmeTiff('http://localhost:8080/data.companion.ome');

6 months ago

Support multifile OME-TIFF in loadOmeTiff (@vivjs/loaders) (https://github.com/hms-dbmi/viv/pull/740)

6 months ago

53e6014: Bump deck.gl to v8.8.27 and luma.gl to v8.5.21 (@vivjs/extensions, @vivjs/constants, @vivjs/viewers, @vivjs/layers, @vivjs/views)

51aca92: fix: Throw error for missing OME-XML in loadBioformatsZarr (@vivjs/loaders)
a1a8007: feat: Set default PhysicalSizeUnit to µm (@vivjs/loaders)
43f659a: fix: Allow unknown OME-XML Description by default (@vivjs/loaders)

6 months ago

fix(loaders): Allow optional TiffData in OME-XML by @manzt in https://github.com/hms-dbmi/viv/pull/714

Full Changelog: https://github.com/hms-dbmi/viv/compare/v0.14.1...v0.14.2

6 months ago

fix(loaders): trim trailing \u0000 in OME-XML string for Firefox compat by @manzt in https://github.com/hms-dbmi/viv/pull/710

Full Changelog: https://github.com/hms-dbmi/viv/compare/v0.14.0...v0.14.1

6 months ago

feat(loaders): Introduce more minimal required Zarr interface by @manzt in https://github.com/hms-dbmi/viv/pull/700
feat(loaders): Drop fast-xml-parser by @manzt in https://github.com/hms-dbmi/viv/pull/701
feat: Validate expected OME-XML metadata by @manzt in https://github.com/hms-dbmi/viv/pull/706
Clarify Docs on and Fix Extensions on OverviewLayer by @ilan-gold in https://github.com/hms-dbmi/viv/pull/565

Full Changelog: https://github.com/hms-dbmi/viv/compare/v0.13.8...v0.14.0

4 years ago

4 years ago

4 years ago