A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
GitHub repository for website
Tools-Microbiome-Analysis
You can cite this resource as:
Shetty, Sudarshan A., and Leo Lahti. Microbiome data science. Journal of biosciences 44, no. 5 (2019): 115.
Pre-print
Zendo:
We are working on an open source project developing R/Bioc methods, benchmarking data, and educational material for microbiome research based on the SummarizedExperiment
class and its derivatives.
More information please check our website R/Bioc microbiome ecosystem with SummarizedExperiment