Toil Save

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Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming. It supports running workflows written in either Common Workflow Language (CWL) or Workflow Description Language (WDL), as well as having its own rich Python API for writing workflows against. It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud.

• Check the website_ for a description of Toil and its features.
• Full documentation for the latest stable release can be found at Read the Docs_.
• Please subscribe to low-volume announce_ mailing list so we keep you informed
• Google Groups discussion forum_
• See our occasional blog_ for tutorials.
• Use biostars_ channel for discussion.

.. _website: http://toil.ucsc-cgl.org/ .. _Read the Docs: https://toil.readthedocs.io/en/latest .. _announce: https://groups.google.com/forum/#!forum/toil-announce .. _forum: https://groups.google.com/forum/#!forum/toil-community .. _blog: https://toilpipelines.wordpress.com/ .. _biostars: https://www.biostars.org/t/toil/ .. _CWL: https://www.commonwl.org/ .. _WDL: https://openwdl.org/

Notes:

• Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.
• Toil dropped Python 2.7 support on February 13, 2020 (the last working py2.7 version is 3.24.0).