radiator 1.1.7 2020-08-21

• PLINK files: fix a couple of bugs reading the tped
• removed tidyr::gather and tidyr::spread dependencies (they are deprecated)
• DArT data in 1-row format was not working properly with latest data.table melt function. Changed to tidyr::pivot_long.

check news section please

radiator v.1.0.0 is the official release.

• There is still documentation and vignette to fix, but this is the release that will be submitted to CRAN
• Major SeqArray and GDS integration
• Imputation module was removed from radiator and now lives exclusively in package grur
• filter_dart is deprecated. Please use filter_rad, the ONE function to rule them all;)
• Trying to fix travis and appveyor

radiator v.0.0.20 2018-11-12

• tidy_vcf, tidy_genomic_data and genomic_converter: works better with ipyrad vcf's

• working to make radiator work correctly with ggplot2 v.3.0.0
• radiator ready for R 3.5.1 "Feather Spray" released on 2018/07/05

• filter_dart and filter_rad: can now opt out of HWE filtering.
• filter_hwe: user can opt to see figures but skip filtering

• genomic_converter, tidy_genomic_data: bug fix when individuals are integers
• fis_summary: arguments updated

• tidy_vcf, tidy_genomic_data and genomic_converter: way faster with huge VCF
• write_fineradstructure: fix bug when data was from DArT

• tidy_vcf, tidy_genomic_data and genomic_converter: way faster with huge VCF
• tidy_vcf and write_seqarray: work better with vcf generated by Stacks
• write_ldna: new function that generates a LDna input file from a tidy data frame.

• tidy_vcf, tidy_genomic_data and genomic_converter: work without strata/pop grouping
• snp_ld: new argument ld.threshold for long.distance linkage disequilibrium.
• write_vcf: will now output ID as LOCUS_COL or LOCUS_(POS-1) if COL info is not provided.