Taxonworks Versions Save

Added

• Outdated names task for CollectionObjects (compare to COL) #2585
• Unified project data download task #1009, in part
• Download project as zipped TSV tables in Download #1009
• CSV generating endpoints /api/v1/taxon_names.csv and /api/v1/otus.csv
• Filter CollectionObject links to "Collection Summary" task #3434
• CollectionObject type facet
• Coordinate and collecting event sections in Browse OTUs

Changed

• Download routes now name files as .tsv
• CollectingEvent allowable max records made smart #3590
• Added extend[]=attribution to /images/123.json

Fixed

• TaxonNameClassification download
• TaxonName descendants facet always included self, it shouldn't have
• Without document facet
• Object cloning in OriginRelationship caused infinite loops #3594
• Quote handling in API autocomplete calls
• Organization name not displaying in attribution copyright label
• Manage Controlled vocabulary term: CVT list is not reloading after clone them from other project
• Not possible to delete asserted distribution once added in radial object #3591
• Manage controlled vocabulary: Delete button doesn't work #3593

Added

• WKT and GeoJSON endpoints for /geographic_items/123.wkt
• Clone ControlledVocabularies across projects #3562
• Batch move taxon names to a new parent within TaxonName filter #3584
• Batch update Source with a Serial within Source filter #3561
• Browse nomenclature hierachy nav counts of invalid/valid link to filter
• Reset forms for user preferences and project card favorites #3545
• Otu RCC5 relationships to the COLDP exporter [#3569]
• Filter images slice in radial linker #3574
• Name relations to Catalogue of Life data package exports [#1211]
• Type Materials to Catalogue of Life data package exports [#3213]
• Filter list: Add border to highlight the last row where a radial was opened #3583

Changed

• Update Gemfile
• TaxonName stats metadata includes coordinate OTUs and synonyms of self
• Change map position in Filter collecting events #3571
• Add type material button is now blue #3579
• Radial navigator: close radial menu when slices are opened in a new tab/window clicking and pressing ctrl/shift/meta keys #3582

Fixed

• Loans referencing containers have 'Total' properly calculated #3035
• TaxonDetermination sort order on CollectionObject comprehensive/browse... again #1355
• OTU API autocomplete not resolving to valid OTU
• Attribution rendering had cryptic license value #3577
• GeographicAreas not registering for some DWCA imports [#3575]
• New collecting event: georeference from verbatim button creates two identical georeferences #3573

Added

• Cached map item report (linked from Filter OTUs)
• Depictions list on Filter image

Changed

• Calls to /api/v1 have a new key/value signature
• Staged image metadata field format from JSON to JSONB [#3446]
• Updated Ruby gems

Fixed

• Batch import BibTeX failing on empty entries
• Chronology stats report
• ImportAttribute facet not working on any predicate searches
• Taxon name/otus filter order bug
• Staged image queries failing when multiple facets used #3556
• Citations list is truncated in Radial Annotator #3560
• DwC attributes are now showing in Stepwise determinations task
• Quick taxon name only works for species #3554
• Filter Images: Change per doesn't update the table #3566

Added

• ImportAttribute facets to various filters
• Project data curation issue tracking URL field (and to base API response) #3550
• Manual option to regenerate derivative images on Show Image
• API gallery endpoint /depictions/gallery
• Image quick forms, add depictions in the context of an image #3540
• Tables of data to nomenclature stats plots, with option to copy to clipboard
• With/out nomenclature date facet on filter nomenclature
• Determiners can be re-ordered (topmost, regardless of year, is preferred) #1355

Changed

• Updated Gemfile
• Updated JS packages
• Derivative images strip EXIF and auto orient
• TaxonName autocomplete change to a strict match mode.
• Bold geographic levels in Type specimen panel in Browse OTU #3544

Fixed

• Subqueries in unified filters were silently ignoring components of the query, e.g. fix spatial + subquery requests #3552
• Geographic level names not displaying on Browse OTU #3553
• Sqed images that fail processing will try again with slower method automatically #3070 #3443
• TaxonName dynamic observation matrix row not properly scoped #3454
• OTU API autocomplete fails to sort results
• Duplicate type status per CollectionObject are not allowed #3535
• Edit/New taxon name: Author order for taxon name does not match author order of source #3551
• Some issues with order of roles (e.g. Determinations) in display #1355

Added

• Task - Nomenclature by year plots #2472
• API for BiologicalRelationships -api/v1/biological_relationships?extend[]=biological_property #3525
• Organization to Attribution slice in Radial annotator #3529
• Delayed job queue cached, currently used in Role-related updates #3437
• Allow organization determiners in DwC occurrences importer

Changed

• Error radius also captured as literal value in addition to conversion to error polygon #3471
• Batch update of collecting event geographic areas is now run in the background, limited to 250 record #3527
• Reverted index-based TaxonName autocomplete to comprehensive version
• Upgraded docker env to Postgis 3.4

Fixed

• Missing synonym record for basionym in COLDP export [#3482]
• Fixed loan related links in several places #3463
• Common name language ISO when no language #3530
• Attribution displays owner/copyright holder Organization names #3515
• CollectingEvent filter fails on cachedgeo* fields #3526
• Reviewing and Organization's related data
• CollectionObject timeline didn't show loans when object containerized #3528
• Browse Annotations "On" filter doesn't work #3505
• Georeferences are not cleaned after unset current collecting event in comprehensive specimen digitization task #3533
• Fix collection object pagination in Browse OTU

Added

• Subsequent Name Form section in New taxon name #3460
• Original form section in New taxon name

Changed

• New species name button is now always visible in Type section on New taxon name task
• Improve COLDP export delimiter usability [#3522]
• Updated Node packages and Ruby gems

Fixed

• Role scoping broken, affecting things like Verifiers list #3514
• api/v1/citation failing on last page of results #3524
• Fix generation of Unit tray labels from Filter nomenclature
• Object graph view failing to render (controller object no longer available!?)
• People as sources missing missing relationship (broke object graph)
• Combinations in COLDP exports lack rank #3516
• Fix coldp.rb undefined method iso8601 for nil:NilClass #3512
• Improve TaxonName autocomplete result prioritization #3509
• Clone button is not clearing input after cloning

Fixed

• Missing organization tab in Owner panel on New image task
• BibTeX download shows incorrect results on New source task #3510
• Asserted distribution API endpoint crashing when count is above 50

Added

• api/v1/data_attributes/brief endpoint
• api/v1/controlled_vocabulary_terms endpoint
• Extracts are citable
• modified and modifiedBy fields to the COL data package exporter #3464
• Pagination to Labels and TypeMaterial .json endpoints #3472
• DataAttribute columns for CollectingEvent and TaxonName filters
• Added ranks for viruses
• CachedMap framework - compute low-resolution maps quickly #3010
• .json and .geojson endpoints implement CachedMaps at /api/v1/otus/:id/inventory/distribution
• Administrator dashboard for CachedMap status
• New indices for some name/cached related fields (Otu, TaxonName, Source)
• Batch update Geographic area radial to filter collecting events
• Customized API version of OTU autocomplete
• GBIF map tiles as an option on maps
• Add related option to nodes in Biological associations graph task
• Layout settings for New image task

Changed

• Predicted adjectives for the epithets ending with -ger and -fer
• Optimized Gnfinder playground new-name detection
• Optimized /api/v1/asserted_distribution, also now uses extend[]=geo_json (disabled if > 50 records requested)
• Updated /api/v1/biological_associations to report full taxonomy #3438
• Updated Ruby gems
• Added date format recognition ####-##-## [#3453]
• Add hyperlinks to OTU labels in Filter biological associations table #3444
• Updated many relationships to validate based on presence of objects, rather than parameters
• Simplified behavior of Otu and TaxonName autocomplete to use new fuzzier indicies
• Clone loan button redirects to new loan task #3462
• Multiple improvements in DwC importers

Fixed

• Georeference parsing didn't handle new Z
• Clearing PinboardItems by class
• Rendering TNT matrix labels
• Initializing new Extract when no Extracts present
• DataAttribute filter facet not working for non-exact matches
• Speed response for Filter's returning DataAttributes #3452
• Going from Image filter to others could result in duplicated rows
• DWCA Importer: Geographic Areas not imported #1852
• Error on catalog_helper: history_other_name
• Error on taxon_name_relationship on rank_name.
• Create new asserted distribution when is_absent is checked in New asserted distribution task
• Repository selection does not appear in Filter Collection Objects #3430
• Docker pointing to outdated base image.
• Global identifiers resolve check not honouring HTTPS
• Interactive keys were not properly scoping to projects in some cases
• Annotations were sometimes added to objects that no longer existed #3445
• Disable editing of imported rows in DwC importer task #3469
• Fixed URL hostname string matching in some places.
• Matrix Column Coder throws an error after autosave ends and observation to be saved no longer exists
• New line delimiter doesn't work in Filter collection object #3480

Added

• NOMEN batch importer error handling/reporting improvements #3427
• More annotation-related facets to Observations filter

Changed

• Autocomplete requests optimized by speed
• NOMEN batch importer treats authors only as verbvatim, Roles are no longer created.

Fixed

• Without depictions filter facets
• Descriptors facets referencing observation/matrix presence/absence
• Errors on taxon_name.rank_name and paper_catalogue.combination
• Documents facet in Source filter
• Documents from other projects appearing in count on radial annotator #3348
• Verbatim name contained 'Suffix' #3425
• Observation matrix facet doesn't work in Filter descriptors
• Lock Is original and Is absent checkboxes in citation form
• Pagination doesn't work correctly in Filter biological associations #3426
• Records per page doesn't work on page change in Citations by source task

Added

• Basic RCC5 support (= OtuRelationship) #257
• Unified filter to observation matrix integration #3415
• Biological associations can now be depicted
• Data depiction facets
• Biological associations filter annotation-based facets
• New stage-only staged image type #3400
• New left-t stage layout #3367
• Add button to add biological associations from Related modal in new biological associations task
• ImportDataset facet in Filter collection objects #3419

Changed

• Updated author and year string for family-group names
• Recent predicate list
• Recent languages list
• People autocomplete
• GeographicArea autocomplete (exact match on alternate value)

Fixed

• Nomen (was "castor") batch load was not assigning parent correctly #3409
• Source and People API endpoints don't try to authenticate #3407
• Date range in filter Collection Object not being applied #3418
• Year import in NOMEN (was "castor") import #3411
• PublicContent missing is_community? method preventing reporting.
• Loans dashboard fails to render when no loans are present
• Staged image processing when boundaries fail to be calculated and calculate incorrectly
• Bug with engine in interactive keys #3416
• Collection object classification summary #3412
• BibTeX typo #3408
• Includes type material and type material observations don't work in Filter images
• Changing the number of items per page or the page shows loan items that are not from the current loan in New/edit loan task #3413
• Sort by name gives an wrong order in filter nomenclature task