Taxonworks Versions Save

Added

• /api/v1/common_names #3794
• /api/v1/biological_associations/simple A simple table format for BiologicalAssociations
• Housekeeping facet in filters has "Recent" button with options to populate past date ranges
• Radials to New image task

Fixed

• DwC download not scoping DataAttributes correctly when records are a subset of objecs from a CollectingEvent
• DwC Dashboard buttons scoped to recent timeframes #3774
• A couple .csv endpoints for /api/v1
• Radial annotator: Filter tab doesn't work in depictions slice #3824
• Filters: Geographic area facet doesn't clear geographic area after reset #3840
• Radial collection object: Taxon determination list is not visible
• Align metadata in GeographicItem debug view
• Biological associations filter bugs
• Several radial annotator and batch annotator slice fixes
• DwC checklist importer fails quietly when taxonomicStatus is empty #3783

Changed

• Documents are no longer destroyed when the last documentation referencing them are deleted.
• Use Ruby 3.3
• CI build/test with PostgreSQL 15
• CI base image uses Node 20

Added

• Highlight row on click in DwC Importer #3795
• Batch update CollectingEvent from CollectionObject filter radial
• Batch update meta_prioritize_geographic_area from CollectingEvent filter radial #3498

Fixed

• CollectionObject summary nomenclature tag failing when no names are present
• Papertrail views for most models were failing
• Syncronized winding of polygons and multipolygons #3712, and others
• DataAttribute alignment in DwC, take 3 #3802
• Radial Annotator: Citation count no longer updates #3806
• Radial Annotator: Depiction count no longer updates #3813
• Radial annotator: Attribution slice loads incorrect records
• Image matrix: OTU depictions cells are not displaying the correct images when otu_filter parameter is set
• New combination task freezes in some cases
• SQL project dump duplicating hierarchies tables rows causing index creation to fail on restore
• OtuPicker doesn't display OTU label when a new OTU is created in New loan task [#3809]

Changed

• All polygons and multi_polygons in GeographicItems are wound to CCW after save
• Updated Ruby gems

Fixed

• DwC dumps cross-mapping attributes between CollectingEvent and CollectionObject (for real?) #3802
• Favorite cards section layout
• Radial batch triggers "re-search" when nothing is changed
• Custom attributes component loads auto filled with incorrect values #3805
• DwC importer crashing on real DwC-A zip archives when first table rows are not headers.

Added

• GeographicItem debug task
• documentation_object_type and documentation_object_id to documentation filter

Changed

• Use zeitwerk loading framework #2718

Fixed

• DwC dumps cross-mapping attributes between CollectingEvent and CollectionObject #3802
• Staged Image filter failing on some identifier queries
• TaxonName batch update
• Contributing link #3752
• Uncaught promise errors #3767
• Custom attributes triggers isUpdated ce state #3764
• Custom attributes panels don't check if data attributes already exist #3762
• Gender agreement of misspellings [#3782]
• Loan item list doesn't update when adding a loan item from Tag or Pinboard #3784
• Unable to add a CO loan item to a loan that already has an OTU loan item with the same id #3785
• CO Loan gifts have tag "On Loan until false" #3731
• Figure panel in New content task
• DwC Occurrence Importer using out of project scope http://rs.tdwg.org/dwc/terms/FossilSpecimen biocuration class.
• Hub: Status filter doesn't work correctly #3791
• Hub: Left and right arrow keys on task hub don't work as expected. #3792

Added

• Emendavit status for ICN names #3716
• "CONFIRM" screen when editing a collecting event with > 100 attached COs #3727
• epithet_only parameter and facet to taxon name filter #3589
• Links for users profiles on project members list (only for administrators)
• Cursor and text to reveal project preference predicates can be reordered #3736
• Batch append collectors to Collecting Events within CE filter
• Batch set Collecting Event date and time within CE filter
• Darwin Core superfamily, subfamily, tribe, subtribe export support
• Darwin Core exporter: include Notes from most recent TaxonDetermination as identificationRemarks
• Save user's custom layout tables #3756 #3307 #3568

Changed

• DwC Occurrence Importer: Parse authorship information in typeStatus field
• DwC Exporter: recordedBy and identifiedBy fields use First Prefix Last Suffix order
• Project member list now has links for users profiles (only for administrators)

Fixed

• dwc_occurrence_id param to /api/v1/dwc_occurrences
• Another project_id scope issue in Otu Filter
• Update DwcOccurence index endpoint
• Uniquify people: Always show radials for selected person
• Remove property doesn't work on Biological relationship composer
• Feet to meter conversion does not work as expected #2110
• OTUs autocomplete API endpoint ignoring having_taxon_name_only param
• DwC importer creating multiple namespaces instead of just one for occurrenceID and eventID
• Combination always visible #3366
• Copy text from PDF

Added

• DwC verbatimLabel support #2749
• Preview option and results reports for filter based batch updates #3690
• Freeform digtization, draw shapes to stub CollectionObjects #3113
• superfamily, tribe and subtribe DwC terms now supported in occurrences importer [#3705]

Changed

• Improved simplified taxonomy rendering
• Unifies all filter-originating batch updates to a common look and feel #3690
• Report file size to browser for downloads
• DwC Checklist Importer: blank originalNameUsageID skip original combination creation instead of erroring #3680

Fixed

• Ordering of descriptors in TNT format [#3711]
• Some ObservationMatrix views/formats were broken or unavailable for preview
• DwC-A checklist importer: fix importer crash caused by nil parent
• Address rendering on loan form #3645
• Citation topic whitespace for paper catalog #187
• Source filter with duplicate results when coming from another filter #3696
• ancestrify parameter for Otu queries not scoping to TaxonNames correctly
• Filter source: BibTeX type facet
• Project data SQL export obfuscating all users instead of just non-members
• Project data SQL export outputting only two rows per hierarchy-related tables
• AssertedDistributions API index call failed when OTU not linked to taxon name
• Missing valid names in nomenclature match task
• DwC Occurrence Importer: prefer correct protonym spelling when misspelling matches current conjugation

Added

• Staged image CollectionObjects are destroy if a) stubs and b) depictions are removed from them to another CollectionObject #3172
• /api/v1/biological_associations/123/globi (preview experiment)
• /api/v1/biological_associations/123/resource_relationship (preview experiment)
• BiologicalAssociations as raw TaxonWorks data/api/v1/biological_associations.csv
• BiologicalRelationships as raw TaxonWorks data/api/v1/biological_relationships.csv
• DwC ResourceRelationship extension (preview) #2554
• Taxonomy summary to CollectionObject summary report
• Metadata summary report from Filter BiologicalAssociations
• Biological associations simple table preview, sortable columns #1946
• GLOBI format table from Filter BiologicalAssociations (preliminary)
• Family by genera report from Filter BiologicalAssociations
• DwC ResourceRelationship extension preview from Filter BiologicalAssociations
• Visualize network from Filter BiologicalAssociations
• BiologicalRelationship can have Identifiers
• "ancestrify" option to TaxonName and Otu filters (adds ancestors of filter result)
• Auto UUIDs as new Identifier::Global::Uuid::Auto for models
• Auto UUIDs are created for BiologicalAssociations and OTUs
• Maintenance Task to add UUIDs to objects that can have them but don't
• TaxonName model to customize attributes
• TaxonNameRelationship model, added validation for the rank of type species and type genus.
• New source task: Person source
• Index view to API for /depictions
• Added extend[]=role_counts to /person/123.json
• Batch update OTU taxon_name within OTU filter #3656
• DwC Checklist importer: support "invalid", "incorrectOriginalSpelling" taxonomic Status
• DwC Checklist importer: option to match and update existing names rather than create new hierarchy from Root
• DwC Occurrence importer: search for repository URL

Changed

• CachedMaps of ancestors are set for rebuild when a descendant Georeference or AssertedDistribution is created
• Radial annotator: Move selected source to the bottom in citation form #3652
• DwC Occurrence importer: more helpful protonym, institution error messages
• Filter interfaces: remove items from list instead redirect to data view #3659
• New BiologicalAssociation defaults to task, not old form
• Extracted CSV generating code to lib/export/csv

Fixed

• Buttons to remove BiologicalProperties in composer failing #3673
• Could not destroy BiologicalRelationship if properties attached
• Some CollectionObject summary values were not scoped to filter query
• Filtering People returned duplicate values one name string searches
• BiologicalAssociations passed to TaxonNames missed object names
• Nulified cached values in Collecting Event, if Geographic area deleted #3668
• Match TaxonName based on original combination #3365
• Radial AD: Quick/recent selector broken on "Move". #3640
• New taxon name: Author panel overflow when source has a long link
• Edit Loan: Loans created without recipient or supervisor cannot be updated
• Fixed bug in DwC importer background processor that was not dealing with errored records.
• Browse OTU: autocomplete overflow #3667
• Comprehensive: Relationship doesn't show up on biological associations list #3671
• DwC Occurrence importer: protonyms could not be found if authorship information didn't match
• DwC Occurrence importer: protonyms could not be found if author was Person #3677
• DwC Checklist importer: empty scientificNameAuthorship field would cause row to error #3660
• DwC Checklist importer: subsequent combinations with synonym status whose parents are synonyms would cause row to error
• Could not set Repository Index Herbariorum flag in interface
• Uniquify People: autocomplete would not select people for merging if already present in Match people table

Added

• Radial collection object: Add repository #3637

Changed

• CachedMaps (WebLevel1) is now based on "State" shapes only, improving resolution
• CachedMap build process adds pre-build step to greatly minimize overall number of spatial calculations
• CachedMap spatial calculations use a intersection + "smoothing" approach
• Also use year of publication to determine correct protonyn having homonyms #3630
• Improved error message when typeStatus name is a homonym in DwC occurrences importer #3632

Fixed

• Duplicate loans appearing Loan filter [#3636]
• New source when cloned and saved is not added to the project sources #3629
• Sequence display when not a Primer
• CachedMap indexing speedups failed to properly utilize prior work
• Duplicate CachedMapRegister rows being created per object
• New Image task, second "Apply" button is not working #3628
• ' [sic]' not removed when searching for synonyms in database to compare with typeStatus in DwC occurrence importer #3633

Changed

• Update Gemfiles
• CachedMap algorithm, now far more precise.
• Browse OTU: Image gallery section is now available for all ranks #3612
• Map saves tile preferences #3619

Fixed

• Anyone can destroy a Community (Global) identifier on a Community object #3601
• Newfoundland/CAR mapping issue #3588
• Role callbacks interfered with creation of nested objects #3622 !! Potentially breaking fix !!
• Queries to /api/v1/sources not scoping to project when project_token used #3623
• CollectionObject summary report tab clicks
• Cached map preview incorrect/default GeographicItem id for GeographicAreas
• Collection object summary report bad link
• Task Biological associations graph: Save fails when trying to update a graph
• Role picker doesn't show organization name when created #3611
• Spinner hangs when apply fails in New Images task #3620

Changed

• Doubled the number of favoritable tasks to 40 #3600

Fixed

• TaxonPage stats, maybe, who knows at this point.
• Images for OTU type material expanded to all protonyms
• Reset project preferences #3599
• Project TSV dump permissions on server side
• Clone moved CVT, not cloned project