Sssom Versions Save

Simple Standard for Sharing Ontology Mappings

0.15.2

2 months ago

What's Changed

Remove slot_uri mapping from literal mapping by @matentzn in https://github.com/mapping-commons/sssom/pull/356
Change slot_uri for literal by @matentzn in https://github.com/mapping-commons/sssom/pull/357

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.15.1...0.15.2

0.15.1

2 months ago

WARNING: This release has been yanked because of a bug in the LinkML schema for Literal Mappings

See #357.

What's Changed

Adding SSSOM profile for literals by @matentzn in https://github.com/mapping-commons/sssom/pull/235
match_string description update by @joeflack4 in https://github.com/mapping-commons/sssom/pull/315
Change sempav to semapv in the tutorial page by @jmillanacosta in https://github.com/mapping-commons/sssom/pull/317
Recommend that YAML keys be sorted by "spec order". by @gouttegd in https://github.com/mapping-commons/sssom/pull/320
Add ability to customize documentation pages using jinja templates by @sujaypatil96 in https://github.com/mapping-commons/sssom/pull/333
Ensure that github action workflow deploys custom docs by @matentzn in https://github.com/mapping-commons/sssom/pull/334
Add additional instructions to matching-tool-implementation-guide.md by @matentzn in https://github.com/mapping-commons/sssom/pull/331
Fix documentation build/deployment Action by @sujaypatil96 in https://github.com/mapping-commons/sssom/pull/335
Fix link to schema in overview document by @matentzn in https://github.com/mapping-commons/sssom/pull/341
Update gendoc to copy subdirectories by @matentzn in https://github.com/mapping-commons/sssom/pull/346
Add WPCI2023 to Presentations list by @cthoyt in https://github.com/mapping-commons/sssom/pull/327
Add "related docs" menu item to documentation page by @matentzn in https://github.com/mapping-commons/sssom/pull/326
upgrade mkdocs-mermaid2-plugin major version by @sujaypatil96 in https://github.com/mapping-commons/sssom/pull/353
Fixes #354 by @hrshdhgd in https://github.com/mapping-commons/sssom/pull/355

New Contributors

@joeflack4 made their first contribution in https://github.com/mapping-commons/sssom/pull/315
@jmillanacosta made their first contribution in https://github.com/mapping-commons/sssom/pull/317
@sujaypatil96 made their first contribution in https://github.com/mapping-commons/sssom/pull/333

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.15.0...0.15.1

0.15.0

10 months ago

What's Changed

Fix publication_date by @matentzn in https://github.com/mapping-commons/sssom/pull/294
Clarifying descriptions of various properties by @matentzn in https://github.com/mapping-commons/sssom/pull/306
Standardize reference to oboInOwl in spec.md by @cthoyt in https://github.com/mapping-commons/sssom/pull/307
Add details on manual mapping curation in docs by @matentzn in https://github.com/mapping-commons/sssom/pull/308
Add issue tracker item to SSSOM datamodel by @matentzn in https://github.com/mapping-commons/sssom/pull/259

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.14.0...0.15.0

0.14.0

10 months ago

What's Changed

Update sssom-schema as well by @matentzn in https://github.com/mapping-commons/sssom/pull/291
Release process documented by @hrshdhgd in https://github.com/mapping-commons/sssom/pull/290
Issues around canonical ordering by @matentzn in https://github.com/mapping-commons/sssom/pull/285
Add OHDSI poster presentation to docs by @matentzn in https://github.com/mapping-commons/sssom/pull/292
Add mapping_set_version to MappingSet metadata by @matentzn in https://github.com/mapping-commons/sssom/pull/295
Add basic version of OMOP mappings guide to SSSOM by @matentzn in https://github.com/mapping-commons/sssom/pull/300
Add docs for setting up a basic mapping commons by @matentzn in https://github.com/mapping-commons/sssom/pull/299
Add guide for tool implementors by @matentzn in https://github.com/mapping-commons/sssom/pull/298
Run make all by @cthoyt in https://github.com/mapping-commons/sssom/pull/303
Fix SSSOM Schema not having bijective prefix map by @cthoyt in https://github.com/mapping-commons/sssom/pull/302

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.13.0...0.14.0

0.13.0

1 year ago

What's Changed

Package context files through make by @hrshdhgd in https://github.com/mapping-commons/sssom/pull/289

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.12.0...0.13.0

0.12.0

1 year ago

What's Changed

Add link to contextualize "drive-by curation" by @cthoyt in https://github.com/mapping-commons/sssom/pull/274
Fix typo in schema by @cthoyt in https://github.com/mapping-commons/sssom/pull/279
minor improvements to some text and formatting by @nlharris in https://github.com/mapping-commons/sssom/pull/280
Minor fix to the “overview” document regarding the TSV format by @gouttegd in https://github.com/mapping-commons/sssom/pull/284
Fix semapv namespace in SSSOM schema by @matentzn in https://github.com/mapping-commons/sssom/pull/287
Cookiecutter directions for new project generation by @hrshdhgd in https://github.com/mapping-commons/sssom/pull/277

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.11.0...0.12.0

0.11.0

1 year ago

High level summary

New elements:

mapping_set_title to capture a human-readable title for a mapping set
registry_title and registry_description to capture the human-readable title and description of an SSSOM mapping set registry
curation_rule to capture a (potentially) complex (set of) condition(s) executed by an agent (usually human) that led to the establishment of a mapping.

Updated elements:

Added mapping_source slot to Mapping
Improve documentation for subject_category and object_category elements

Documentation

Compiled a list of all SSSOM talks: https://mapping-commons.github.io/sssom/presentations/
Document chaining rules: https://mapping-commons.github.io/sssom/chaining_rules/

Quality control and Technical infrastructure

Make adding a concrete SSSOM example part of the new element request
Adding QC checks for example SSSOM files hosted in the repo

Detailed summary

Adding mapping_source slot to Mapping by @matentzn in https://github.com/mapping-commons/sssom/pull/230
Add mapping_set_title by @matentzn in https://github.com/mapping-commons/sssom/pull/220
Add registry title and registry description slots by @anitacaron in https://github.com/mapping-commons/sssom/pull/240
Update SSSOM talks 2022 in docs by @matentzn in https://github.com/mapping-commons/sssom/pull/252
Document chaining rules by @matentzn in https://github.com/mapping-commons/sssom/pull/242
Improve documentation for subject and object categories by @matentzn in https://github.com/mapping-commons/sssom/pull/257
Add inversion rules for SEMAPV cross-species predicates. by @gouttegd in https://github.com/mapping-commons/sssom/pull/261
Make adding a concrete SSSOM example part of the new element request by @matentzn in https://github.com/mapping-commons/sssom/pull/266
Add some examples of using see_also to SSSOM schema by @matentzn in https://github.com/mapping-commons/sssom/pull/267
Making adding a link to a working example required when adding a new field by @matentzn in https://github.com/mapping-commons/sssom/pull/269
Adding QC checks for example SSSOM files by @matentzn in https://github.com/mapping-commons/sssom/pull/268
Add curation_rule to SSSOM by @matentzn in https://github.com/mapping-commons/sssom/pull/258
SSSOM 0.11.1 release by @matentzn in https://github.com/mapping-commons/sssom/pull/270

New Contributors

@anitacaron made their first contribution in https://github.com/mapping-commons/sssom/pull/240
@gouttegd made their first contribution in https://github.com/mapping-commons/sssom/pull/261

Acknowledgements

The SSSOM core team thanks @saubin78 and @croussey for thei significant contributions to discussions and creation of examples!

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.10.0...0.11.0

0.10.0

1 year ago

What's Changed

fixed some typos by @nlharris in https://github.com/mapping-commons/sssom/pull/208
revise typo by @nicolevasilevsky in https://github.com/mapping-commons/sssom/pull/209
fix mermaid docs generated via linkml doc-gen by @sierra-moxon in https://github.com/mapping-commons/sssom/pull/213
mermaid2 plugin, linkml & linkml-runtime version update by @sierra-moxon in https://github.com/mapping-commons/sssom/pull/214
Fix broken linke in docs by @matentzn in https://github.com/mapping-commons/sssom/pull/216

New Contributors

@nlharris made their first contribution in https://github.com/mapping-commons/sssom/pull/208
@nicolevasilevsky made their first contribution in https://github.com/mapping-commons/sssom/pull/209

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.9.4...0.10.0

0.9.4

1 year ago

What's Changed

add auto generated citation by @sierra-moxon in https://github.com/mapping-commons/sssom/pull/203
Copyediting on mapping-predicates text by @caufieldjh in https://github.com/mapping-commons/sssom/pull/204
Fixing hasDbXref reference in examples by @matentzn in https://github.com/mapping-commons/sssom/pull/201
Update the examples and docs to reflect new spec on mapping_justification by @matentzn in https://github.com/mapping-commons/sssom/pull/205

New Contributors

@sierra-moxon made their first contribution in https://github.com/mapping-commons/sssom/pull/203
@caufieldjh made their first contribution in https://github.com/mapping-commons/sssom/pull/204

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.9.0...0.9.4

0.9.3

2 years ago

What's Changed

Corrected path for doc generation by @hrshdhgd in https://github.com/mapping-commons/sssom/pull/200

Full Changelog: https://github.com/mapping-commons/sssom/compare/0.9.2...0.9.3