A Slicer extension to provide a GUI around pyradiomics
SlicerRadiomics is an extension for 3D Slicer that encapsulates pyradiomics library that calculates a variety of radiomics features.
See list and detailed description of computed features in pyradiomics library documentation.
SlicerRadiomics is currently distributed as an extension via the 3D Slicer ExtensionManager. Follow these steps to install the extension:
Radiomics
and install the extension by clicking the INSTALL
button.Radiomics
and dependencies is completed,
you will need to restart Slicer application to access the module.
If installation was successful, you should be able to see
Radiomics
module in the Slicer module list.SlicerRadiomics
from sourceIn order to build this extension, you need to have a version of Slicer built from source. You can build Slicer following the instructions. Once you have done that, all you need to do are the following steps:
$ git clone https://github.com/radiomics/SlicerRadiomics.git
$ mkdir SlicerRadiomics-build
$ cd SlicerRadiomics-build
$ cmake -DSlicer_DIR:PATH=/path/to/Slicer-Release/Slicer-build ../SlicerRadiomics
$ make
Note: cmake is one of the prerequisites for building 3D Slicer
SlicerRadiomics
from a build treeThere are two options:
cd SlicerRadiomics-build/inner-build/
build_dir=$pwd
./Slicer \
--launcher-additional-settings $build_dir/AdditionalLauncherSettings.ini \
--additional-module-path $build_dir
SlicerRadiomics
module.$ cd inner-build
$ make package
Once completed, you can install the extension from file.
Restart Slicer and open SlicerRadiomics
module.
If you found a bug, or to report a reproducible problem, submit an issue.
If you have a question about using the extension, please ask on the Radiomics community section of the 3D Slicer Discourse.
This project is supported in part by the National Institutes of Health, National Cancer Institute Informatics Technology for Cancer Research (ITCR) program via grant U24 CA194354 (PI Hugo Aerts).