Sample Sheet Versions Save

What's Changed

• Feature support cell ranger indexes by @golharam in https://github.com/clintval/sample-sheet/pull/102
• Only read the key/value pair, if they both exist. by @golharam in https://github.com/clintval/sample-sheet/pull/99
• Allow samplesheet to accept a file handle or a Path like object by @dsommer in https://github.com/clintval/sample-sheet/pull/114
• Feature support more cellranger indexes by @accumb3ns in https://github.com/clintval/sample-sheet/pull/118

New Contributors

• @dsommer made their first contribution in https://github.com/clintval/sample-sheet/pull/114
• @accumb3ns made their first contribution in https://github.com/clintval/sample-sheet/pull/118

Full Changelog: https://github.com/clintval/sample-sheet/compare/0.11.0...0.13.0

Features:

• Allow 10x cellranger barcode indexes in the index columns

Breaking

To make use of the smart_open library, simply install it alongside sample-sheet as it is no longer vendored here.

• Support for redundant Sample_ID with warning
• Ordered output of sample headers in .write() as they were read-in or assigned
• Case insensitive hashing for sample attributes

Specifically formats with:

• blank lines
• non-comma terminated lines

Feature request from @andybearman