LaTeX Journal Article Templates for R Markdown
joss_article() now correctly works as base_format for bookdown::pdf_book() (thanks, @mlysy, #564).
oup_article() now supports also acknowledgments in addition to acknowledgements as the original OUP LaTeX template (thanks, @dmkaplan2000, #563).
Update resources for copernicus_article() to version 7.8 from 18 March 2024 (@RLumSK) and fix issue #565 reported by @colinasmith
Update tf_article() template to latest bundle update from InteractCADLaTeX v1.04 - May 2023.
thanks: true will now show the contact information will all authors. Use
thanks:
author:
- name: Author 1
email: email 1
to add specific authors.
biblio-style is now supported. It is set by defauilt to tfcad.bst for T&F standard Chicago author-date style.
sim_article(). This implies new resources files and new available options in template (thanks, @henrikibster, #545).elsevier_article() Rmd skeleton is now updated to show different available bibliostyle file (i.e *.bst for natbib) with elsearticle document class. biblio-style: elsarticle-harv is set by default to correctly work with the authoryear classoption already set (thanks, @pepijn-devries, #545).
Update ajs_article() resources for the template.
Update frontiers_article() to version 3.4 from 2022.
natbib citation processor when Pandoc 3.1.7+ is used, because Frontiers documentclass requires usage of natbib and it conflicts with pandoc Citeproc.Update mnras_article() and lncs_article() to work with the Pandoc 3.1.7+ citeproc change.
ajs_article() and jss_article() require Pandoc 2.7+ (possibly required by some changes in jss.cls).
rjournal_article() is now soft deprecated in favor of rjtools::rjournal_pdf_article() as rjtools package is now the recommended workflow at https://rjournal.github.io/submissions.html. A warning will be thrown when rticles' function is used.
springer_article() has been updated to new LaTeX templates and CTAN package (thanks, @eliocamp, #494). we really advice to start new article from scratch by creating new document using lates RMakrdown template. Among changes:
.tex templates derived from https://www.springernature.com using sn-jnl.cls
natbib is now the default citation processing package used (previous it was pandoc citeproc) and number_sections is TRUE by default now. Set to FALSE for unnumbered headers.biblio-style is now ignored as references styling happens with document class option, so using classoptions is now required. PACS and MSC is also ignored in favor of pacs.jel and pacs.msc.ieee_article() now supports several affiliations per authors when using the wide: true mode (thanks, @phamdn, #500).
Add a helper function string_to_table() for documentating configuration from a list copy pasted from a .tex template.
Update to the mdpi_article() format (thanks, @mps9506, #515)
xelatex.Definitions/mdpi folder.Improve elsevier_article() affilliations for authors by supporting same fields as in official template. This also fix address with comma not showing (thanks, @gjpstrain, @mps9506, #509).
Update RJournal.sty to latest version to support number sections (thanks, @zeileis, #517).
Update to the asa_article() format (thanks, @ianmtaylor1 #506, @jepusto, #507):
natbib to tweak option and biblio-style using Pandoc's variables,Adapt some template supporting strikethrough to new Pandoc 3.0+ usage of soul instead of ulem.
Some other minors change to templates to be closer to Pandoc's own LaTeX template.
Template internal change: lineno CTAN package is now loaded after amsmath in peerj_article(), elsevier_article() and mdpi_article() because of a conflict with last version of lineno (thanks, @bischrob, #513).
Update Copernicus Publications template to version 7.3 from 2023-03-17 (@RLumSK, #508, #514, #519).
lncs_article() template for submissions to Lecture Notes in Computer Science (thanks, @eliocamp, #445).Remove \usepackage{utf8x} usage by default in plos_article() TeX template as it conflicts with recent latex2e. As it is in the official PLS journal template, it is not removed completely but opt-out by default. Use with_utf8x pandoc variable in YAML to opt-in again if you want to deal with the conflict differently (thanks, @Sciurus365, #496).
Update glossa_article() and path template to opt-out using microtype to prevent issues. Add it back using extra_dependencies in YAML with adding a preamble if needed (thanks, @stefanocoretta, #487).
In elsevier_article(), corresponding author is correctly marked with a * even if no other footnote are set on the author.
ams_article() bundles ametsoc.cls now as ametsoc package is not more available on CTAN.
Nested code chunk in list are now correctly rendered in jss_article() (thanks, @nbenn, #476).
Update Copernicus Publications template to version 6.8 from 2022-03-28 (@RLumSK, #478, #479).
Update rjournal_article() template to match current style file. Package and task view macros use secure links, and the footer includes the year (@mitchelloharawild)
Updates to Pandoc's template following recent change with new Pandoc version in relevant templates.
elsarticle.cls to version 3.3 in elsevier_article(). This is a breaking change in the format that now requires at least Pandoc 2.10 and uses the latest version of the .cls file, also provided in elsarticle on CTAN. See the included template for this format. Also, natbib is now used y default for citation processing. You can use renv to manage your project in locked environment of packages (thanks, @robjhyndman, #467).Update jss_article() template to handle ORCID links for each author from a new YAML field, and to use updated jss.cls class file (thanks, @remlapmot, #465).
New informs_article() template for submissions to INFORMS journals (thanks, @robjhyndman, #460).
New iop_article() template for submissions to IOP journals (thanks, @robjhyndman, #462).
New isba_article() template for submissions to Bayesian Analysis journal (thanks, @dmi3kno, #461).
Update Copernicus Publications template to version 6.6 from 2022-01-18 (@RLumSK, #463, #464).
rss_article() now supports more than two authors using usual YAML list syntax in the new authors field. Old author and author2 are kept for backward compatibility, but we advice any user to use the new formats. See update Rmd skeleton template (thanks, @dmi3kno, #466).
graphicx LaTeX package has been added to ieee_article() format (thanks, Sachin Hebbar, on RStudio Community).oup_article() template has been updated to include the possibility of using the latest OUP authoring template now available on CTAN. It is still possible to use old .cls file as some journals still depend on it. oup_version will now control if the old version (oup_version = 0) or the new version is to be used (oup_version = 1). For this version, oup_version = 0 is the default. See ?rticles::oup_article() for links to resources. The bundled Rmd template has also evolved. Use oup_v0 or oup_v1 as template name - Easiest way to create the template still remains using the RStudio IDE. oup_version = 1 comes with a requirement of Pandoc 2.10 minimum. (thanks, @dmkaplan2000, #431)New trb_article() for annual meeting submissions to the Transportation Research Board Annual Meeting (thanks, @gregmacfarlane, #427).
New wellcomeor_article() for Wellcome Open Research articles (thanks, @arnold-c, #436).
Update Copernicus Publications template to version 6.4 from 2021-08-16 (thanks, @RLumSK, #446).
glossa_article() is incompatible with microtype CTAN package for now. When TinyTeX is used, it will be uninstalled before rendering.
All template were updated to include parts required by some Pandoc feature when they are used: highlighting, CSL & citation processing, include before, after and in header, Pandoc's markdown tables. Checks are now included in CI test so that new template missing these parts are detected.
Fixed an issue with microtype CTAN package in amq_article() by patching the template until upstream issue if
fixed.
sage_article() now correctly set cite style in template to use comma to match the Sage Havard style per Journal's guideline (thanks, @MalteHueckstaedt, #447).
Add copyrightyear and pubyear variable in bioinformatics_article() (thanks, @stephenturner, #424).
New jedm_article() for the Journal of Educational Data Mining template (thanks, @jooyoungseo, #251).
New ajs_article() for Austrian Journal of Statistics (thanks, @matthias-da, #437).
New glossa_article() for articles of Glossa: a journal of general linguistics (thanks, @stefanocoretta, #361).
Since rticles 0.15, per requirement with R Journal, rjournal_article() uses knitr::purl() to produce a R file with the code from the Rmd file. Last version eagerly overwrites any existing R file with the same name as the purled file. From now on, if a .R already exists with the name of the output, it won't be overwritten anymore, and not purled file will be outputted. This prevent issue with users maintaining themselves their own R file to accompany the article. A warning is issued to remind of deleting the existing R file is one want to use the purled R file (thanks, @Enchufa2, #433).
Update Copernicus Publications template to version 6.3 from 2021-07-08 (thanks, @RLumSK, #432).
All templates have now the $highlighting-macros$ variables required for Pandoc highlighting (#435).
Template for tf_article() gains a classoption variable (thanks, @statzhero, #434).
Add the fenced div with id #refs in frontiers_article() skeleton to place the reference section in the correct expected place (thanks, @graysonwhite, #423).
bioinformatics_article() now separates manuscript_type (e.g., Applications note, Original article) and subject_section (e.g. Genome analysis, Phylogenetics) in template and skeleton (thanks, @stephenturner, #415)
For contributors to this package: Markdown syntax is now used with roxygen2 to document R functions. Refer to formating rules on roxygen2 website
bioinformatics_article() has no more trailing comma after last author (thanks, @stephenturner, #413).
Fix an issue with elsevier_article() and table produced by RStudio Visual Editor. The template gains some packages for allowing grid table in Markdown (thanks, @ccamara, #421)
lipics_article() skeleton now sets option bookdown.theorem.preamble to FALSE to work with bookdown::pdf_book() and avoid conflicst in theorem environment definition. This requires bookdown 0.23 or higher (#392).
oup_article() template now largely compatible to that of elsevier_article() (thanks, @dmkaplan2000, #403)
elsevier_article() now supports biblio-style Pandoc's variable to set the natbib bibliography style in YAML header (thanks, @gregmacfarlane, #402).
Fix an issue with rjournal_article(). The .R file in output is now correctly overwritten on a new render if it existed from a previous render (thanks, @apreshill, #394).
Update Copernicus Publications template to comply with editor's guidelines following a manuscript bounce back during the typesetting step. Copernicus does not allow to add any \usepackage command as they all are included in copernicus.cls for supported LaTeX packages. This is leading to breaking changes with existing template - please follow the advice below.
algorithms: true cannot be used anymore and as no more effect. \usepackage{algorithmic} and \usepackage{algorithm} has been removed from the template as the command are already done in copernicus.cls. Please, make sure algorithms and algorithmcx are installed.highlight parameter of rmarkdown::pdf_document to enable or disable syntax highlighting with Pandoc. To comply with the above guideline by Copernicus, it is disabled by default (highlight: NULL) to prevent Pandoc adding any more packages required for its highlighting. Syntax highlighting can be reactivating by using highlight: "default" in the YAML header as this can be desirable before submitting for typesetting. (thanks, @RLumSK, @nuest, #391).Fix issue with Pandoc's citation processing by updating all templates with last relevant changes from Pandoc's default template (thanks, @BlackEdder, @dahrens, #390)
remove warning in joss_article() about citation_package (thanks, @llrs, #389).
fix an issue with rjournal_article() template to insert newline in author's block only if a field exist (thanks, @huizezhang-sherry, #387)
Update Copernicus Publications template to version 6.2 from 2021-01-15 (thanks, @RLumSK, #366).
Add article template pihph_article() for the Papers in Historical Phonology (PiHPh) (thanks, @stefanocoretta, #362).
Add article template ims_article() for Institute of Mathematical Statistics Journals, e.g., Annals of Applied Statistics (thanks, @auzaheta, #372)
springer_article() now uses the yaml variable biblio-style to set bibliogrphy style
instead of bibstyle. (@eliocamp, #358)
Fixes a bug when rendering arxiv_article() with recent version of TeX Live by adding \usepackage{lmodern} to the template. (#thanks, @slemonide, #343)
arxiv_article() now supports header-includes and biblio-style to use in the YAML header in order to customize its template. Default bibliography style is still unsrt if not set as before. (thanks, @eliocamp, #356).
Update jss.cls to version 3.2 (#329).
Options can now be passed to hyperref packages using header-includes and \PassOptionsToPackage in the AEA template (thanks, @nurfatimaj, #334)
Update Copernicus Publications template to version 6.1. This is includes a final
fix for the LaTeX problem sanitized with the last rticles update (thanks, @RLumSK, #331).
Update all templates regarding CSLReference environment following changes in Pandoc's default template.