Qqman Versions Save

• Minor fix to location to referenced image for pandoc self-contained README.html generation.

• Annotate SNPs below a p-value threshold with the annotatePval= option. See vignette for details.
• Annotate the top SNP on each chromosome with the annotateTop= option. See vignette for details.

• Does not assume that SNPs are evenly distributed across chromosomes when deciding where to place the tick in the center of the chromosome.
• Changed single chromosome x-axis notation to use Mb instead of raw pos
• qq() accepts graphical parameters the same way as manhattan()
• Removed default xlim
• Citation details on package load
• Added axis label options
• Removed ymax argument in favor of allowing user to set ylim in ...
• Option to not take log of p-value

This version of the code was a standalone script (not a package) that when sourced made the qq and manhattan functions available. The code here allowed for confidence intervals on qq-plots and more advanced highlighting/annotation than v0.1.x releases.

Version 0.1.1 on CRAN. Minor changes to vignette.

Same as previous release, archiving for ZENODO