Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Circos.radar_chart()
static method for radar chart plotCircos.chord_diagram()
method as an alias for Circos.initialize_from_matrix()
Circos.initialize_from_tree()
& track.tree()
methodstrack.genomic_features()
method to accept SeqFeature (not only list[SeqFeature])track.tree()
method to enhance tree annotation functionality (Breaking Change)TreeViz
class for handling tree property & annotationCircos.initialize_from_tree()
staticmethod to more easily plot phylogenetic treeload_example_tree_file()
functionload_eukaryote_example_dataset()
functiontrack.xticks_by_interval()
methodtrack.heatmap()
methodcenter
& r_center
properties to Track classcenter
property to Sector classtrack.heatmap()
method to accept numerical list and numpy 1d-arraycircos.savefig()
method to suppress memory leak during multiple plotsgff.get_seqid2size()
got incorrect multi-contig size (#33)https://github.com/moshi4/pyCirclize/compare/v0.5.0...v0.5.1
track.stacked_bar()
method for plotting vertical stacked bartrack.stacked_barh()
method for plotting horizontal stacked bardataframe
property to Matrix classhttps://github.com/moshi4/pyCirclize/compare/v0.4.0...v0.5.0
sector2clockwise
option to enable plotting sector with anti-clockwise directionflake8
to ruff
https://github.com/moshi4/pyCirclize/compare/v0.3.1...v0.4.0
xxx.line()
method to enable selecting arc or linear styleload_prokaryote_example_file()
functionbiopython<=1.79
is installedhttps://github.com/moshi4/pyCirclize/compare/v0.3.0...v0.3.1
circos.colorbar()
methodtrack.grid()
methodcircos.ax
propertytrack.line()
bug when plotting minus directionhttps://github.com/moshi4/pyCirclize/compare/v0.2.1...v0.3.0