A versatile sequenced read processor for nanopore direct RNA sequencing
--fast5
now writes multi-read FAST5 files by default. --symlink-fast5
is removed as symbolic links are not compatible with multi-read FAST5s.barcode_score
within sequencing_summary.txt
in the phred-scale.This minor update fixes a problem in the binary packages.
(from 0.4)
filename
in sequencing_summary.txt
points to wrong locations of
FAST5 files when both FAST5 output and barcoding are turned on.filename
in sequencing_summary.txt
points to wrong locations of
FAST5 files when both FAST5 output and barcoding are turned on.Changes in 0.3.1
New features in 0.3
--polya
turned on, poly(A) tail dwell time is written to sequencing_summary.txt
. More detailed information is written to the dumped events by the --dump-basecalled-events
switch.poreplex.log
.--dump-basecalled-events
now includes the attributes for signal scaling parameters and the last position that DNA adapter ends within the signal.fail
ed reads. The minimum required length can be changed with the --minimum-length
switch. (Suggested by Nathan Roach)Changes in 0.3
filename
in sequencing_summary.txt
is now shown as a relative path from the output directory, not from the subdirectory for a read group.sequencing-summary.txt
are mixed up in the output file sometimes.--filter-chimera
option turns it back on.New features in 0.3
--polya
turned on, poly(A) tail dwell time is written to sequencing_summary.txt
. More detailed information is written to the dumped events by the --dump-basecalled-events
switch.poreplex.log
.--dump-basecalled-events
now includes the attributes for signal scaling parameters and the last position that DNA adapter ends within the signal.fail
ed reads. The minimum required length can be changed with the --minimum-length
switch. (Suggested by Nathan Roach)Changes in 0.3
filename
in sequencing_summary.txt
is now shown as a relative path from the output directory, not from the subdirectory for a read group.sequencing-summary.txt
are mixed up in the output file sometimes.--filter-chimera
option turns it back on.Changes in this version:
LICENSE.txt
to the source distribution.This is the first alpha release of poreplex.