Pharmai Plip Versions Save

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

v2.3.0

8 months ago

What's Changed

Fixes PDB file correction for multi-model structures by @kalinni in https://github.com/pharmai/plip/pull/120
Fixes a bug when using --nofix by @zrt in https://github.com/pharmai/plip/pull/126
fixes salt bridge detection for nucleic acid receptors by @sungekim in https://github.com/pharmai/plip/pull/127
Updates ImageMagick to version 7 and makes its use platform independent by @kalinni in https://github.com/pharmai/plip/pull/144

New Contributors

@zrt made their first contribution in https://github.com/pharmai/plip/pull/126
@sungekim made their first contribution in https://github.com/pharmai/plip/pull/127

Full Changelog: https://github.com/pharmai/plip/compare/v2.2.2...v2.3.0

v2.2.2

3 years ago

fixed a bug that cause encoding errors to be thrown on some systems and Docker images

v2.2.1

3 years ago

streamlines citation information
adds new paper as standard reference

v2.2.0

3 years ago

This minor release bundles a few things:

atom-level interaction detection for the receptor side
proper handling of multi-model structures incl. visualization
reports now contain information about the model that was analyzed

v2.1.9

3 years ago

bug fixes in DNA handling

v2.1.8

3 years ago

PLIP now reports all individual atoms that engage in interactions
minor code optimizations

v2.1.7

3 years ago

This is the PLIP Christmas release :christmas_tree: :santa: Thanks to all supporters and contributors.

fixes minor bugs when handling multiple models from command line
removes legacy compatibility code for MacOS
fixes issues when visualizing in PyMOL for other models than the first one

v2.1.6

3 years ago

minor update to ensure working with upcoming API changes at RCSB PDB (see http://www.rcsb.org/news?year=2020&article=5f9714798807d067f8922116)
status checks for obsolete PDB files was removed as new RCSB GraphQL API does not yet support this (https://data.rcsb.org/migration-guide.html#pdb-file-description)

v2.1.5

3 years ago

bug fixed that caused alt locations to be incorrectly parsed (see #80)
adds support to choose model in ensemble structures (--model)
resolves issues when downloading PDB files directly with PLIP

v2.1.4

3 years ago

fixes invalid dependency of pymol on PyPi
makes use of static function declarations where possible