Osparc Iseg Versions Save

The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data

v1.2.2

2 years ago

What's Changed

Full Changelog: https://github.com/ITISFoundation/osparc-iseg/compare/v1.2.1...v1.2.2

v1.2.1

2 years ago

What's Changed

Full Changelog: https://github.com/ITISFoundation/osparc-iseg/compare/v1.2...v1.2.1

v1.2

2 years ago

This update release of iSeg includes several new tools, features and bug fixes, e.g.

  • new tools for "cleaning" a segmentation
    • e.g. topological fixes (genus zero, manifold),
    • "supplant tissue", which remove a tissue by evenly distributing it to adjacent tissues
    • split tissue, to find disconnected regions
    • set random colors to selection
  • add guide to OLC brush, to show outline of segmentation in different slice
  • new/improved import surface/lines feature, allowing to use external CAD/modeling tool to enrich/modify segmentation
  • improvements to morphological operators, fix behavior for non-uniform voxel spacing
  • import of color images (e.g. Visible Human color image stack) with colors lookup table
  • improvements to surface viewer (show disconnected regions, show coarse surface)
  • update thirdparty libraries for improved performance (TBB parallelization): ITK 5.0 and VTK 8.2
  • various bug fixes, e.g.
    • fixed incorrect slice order in Dicom import
    • ensure transforms attached to image data are preserved, so models are positioned in the original "world coordinate system"

New Contributors

Full Changelog: https://github.com/ITISFoundation/osparc-iseg/compare/v1.1...v1.2

v1.1

2 years ago

This update release of iSeg includes several new tools and features, such as

  • multi-selection support in tissue explorer
  • fast surface visualization of selected tissues/target, for inspection
  • improved interpolation
  • improvements and fixes to OLC tool
  • performance improvements
  • support for color images, e.g. cryosections
  • bug fixes (Merge Projects, Image Transform editor, radius units in OLC tool, ..)

Full Changelog: https://github.com/ITISFoundation/osparc-iseg/compare/v1.0...v1.1

v1.0

2 years ago

Description The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data. iSEG includes a variety of semi-automatic segmentation methods. The key strengths of iSEG are a) a powerful set of tools for manual segmentation (correction), b) support for massive image sizes, c) suport for segmenting complex models with a large number of tissues. iSEG features a plugin mechanism, which allows users to easily extend the application with custom widgets. The development of iSEG has been driven by the Virtual Population project at the IT'IS Foundation, due to a lack of alternatives amongst open source and commercial tools.

Installation instructions

  1. Download the zipped binaries
  2. Extract the zip file to a desired location
  3. Execute iSEG by executing iSeg.exe file

Release notes

  • Initial open sourcing of iSEG source code

opensource-v1.2

4 years ago

This update release of iSeg includes several new tools, features and bug fixes, e.g.

  • new tools for "cleaning" a segmentation
    • e.g. topological fixes (genus zero, manifold),
    • "supplant tissue", which remove a tissue by evenly distributing it to adjacent tissues
    • split tissue, to find disconnected regions
    • set random colors to selection
  • add guide to OLC brush, to show outline of segmentation in different slice
  • new/improved import surface/lines feature, allowing to use external CAD/modeling tool to enrich/modify segmentation
  • improvements to morphological operators, fix behavior for non-uniform voxel spacing
  • import of color images (e.g. Visible Human color image stack) with colors lookup table
  • improvements to surface viewer (show disconnected regions, show coarse surface)
  • update thirdparty libraries for improved performance (TBB parallelization): ITK 5.0 and VTK 8.2
  • various bug fixes, e.g.
    • fixed incorrect slice order in Dicom import
    • ensure transforms attached to image data are preserved, so models are positioned in the original "world coordinate system"

opensource-v1.1

5 years ago

This update release of iSeg includes several new tools and features, such as

  • multi-selection support in tissue explorer
  • fast surface visualization of selected tissues/target, for inspection
  • improved interpolation
  • improvements and fixes to OLC tool
  • performance improvements
  • support for color images, e.g. cryosections
  • bug fixes (Merge Projects, Image Transform editor, radius units in OLC tool, ..)

opensource-v1.0

6 years ago

Description

The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data. iSEG includes a variety of semi-automatic segmentation methods. The key strengths of iSEG are a) a powerful set of tools for manual segmentation (correction), b) support for massive image sizes, c) suport for segmenting complex models with a large number of tissues. iSEG features a plugin mechanism, which allows users to easily extend the application with custom widgets. The development of iSEG has been driven by the Virtual Population project at the IT'IS Foundation, due to a lack of alternatives amongst open source and commercial tools.

Installation instructions

  1. Download the zipped binaries
  2. Extract the zip file to a desired location
  3. Execute iSEG by executing iSeg.exe file

Release notes

  • Initial open sourcing of iSEG source code