A scalable bacterial genome assembly, annotation and analysis pipeline
This update release provides new features, enhancements and several bugfixes. Most important change: For the taxonomic species identification Kraken has been replaced by a combined Mash/ANI approach against RefSeq genomes which resulted in a massively reduced db size, making ASA³P even more eligible for smaller systems!
This is a patch release improving the -c/--check
option in order to pre-check the configuration file.
Config checks and error messages have been improved and streamlined.
This is a patch release fixing a "permission denied" error within the Docker container if an external scratch volume (-s <path>
) is not set explicitly.
This is a new version providing new features, enhancements and bugfixes:
As the ASA³P directory (databases & 3rd party tools) is too big to upload it on GitHub, we provide them on our own servers. Download URLs for all necessary files are given in the readme: https://github.com/oschwengers/asap#availability
This is a patch release fixing some minor issues and provide some minor enhancements:
This is a patch version providing several minor enhancements and bugfixes:
As the ASA³P volume containing all databases and 3rd party executables is too big to upload it on GitHub, we provide them on our own servers. Download URLs for all necessary files are given in the readme
: https://github.com/oschwengers/asap#availability
This is a patch version providing several minor enhancements and bugfixes:
As the ASA³P volume is too big to upload it on GitHub, we provide them on our own servers. Download URLs for all necessary files are given in the readme
: https://github.com/oschwengers/asap#availability
Furthermore, this update also catches up a lacking jump to minor version v1.1.0:
The first public version 1.0.0