Openneuro Versions Save

A free and open platform for analyzing and sharing neuroimaging data

v4.23.0

3 weeks ago

What's Changed

chore(deps): Configure dependabot to group PRs and update GHA by @effigies in https://github.com/OpenNeuroOrg/openneuro/pull/3002
chore(deps): Fix dependabot config by @effigies in https://github.com/OpenNeuroOrg/openneuro/pull/3005
chore(deps): Bump the actions-infrastructure group with 3 updates by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/3006
feat(app): Disable derivatives tab if ToS not accepted by @effigies in https://github.com/OpenNeuroOrg/openneuro/pull/2994
chore(deps): Bump codecov/codecov-action from 3 to 4 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/3007
fix(app): Show file metadata for schema validator issues by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2996
fix(app): Update to React 18 and replace jsx-to-markdown with react-markdown by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/3009
chore(deps): Bump the pipenv group in /services/datalad with 11 updates by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/3010
Add 30 second timeout to dataset resolver by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/3012
fix(app): Restrict data table date display to four common formats by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/3014
chore(deps): Bump follow-redirects from 1.15.4 to 1.15.6 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/3016
Deno command line tools by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/3017

Full Changelog: https://github.com/OpenNeuroOrg/openneuro/compare/v4.22.0...v4.23.0

v4.22.0

3 months ago

What's Changed

chore(deps-dev): Bump vite from 4.4.12 to 4.5.2 in /packages/openneuro-app by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2980
fix(app): Use our own Markdown component that sanitizes HTML following GitHub-like rules by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2982
deps(worker): Update to git-annex 10.20230926 by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2983
chore(deps-dev): Bump vite from 4.4.12 to 4.5.2 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2974
Fix a link to openneuro-cli by @yarikoptic in https://github.com/OpenNeuroOrg/openneuro/pull/2989
fix(app): Raise preference for exact matches of accession numbers when searching for keywords above other fields by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2991
feat(app): Add a quick shortcut for accession number -> dataset page to homepage by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2990
[ENH] Add link to external participant level search to filters block by @surchs in https://github.com/OpenNeuroOrg/openneuro/pull/2988
fix(app): Add aria-role to accordion tab and test for Neurobagel component by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2993
FIX: Display metadata lists as unordered lists by @effigies in https://github.com/OpenNeuroOrg/openneuro/pull/2985

New Contributors

@surchs made their first contribution in https://github.com/OpenNeuroOrg/openneuro/pull/2988

Full Changelog: https://github.com/OpenNeuroOrg/openneuro/compare/v4.21.3...v4.22.0

v4.21.2

4 months ago

What's Changed

Improve handling of file requests during worker restarts by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2960
Test fixes for date instability by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2966
fix(worker): Add test and character set detection for non-utf8 files by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2965
fix(api): Prevent crash when tree is requested with no children by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2964

Full Changelog: https://github.com/OpenNeuroOrg/openneuro/compare/v4.21.1...v4.21.2

v4.21.1

5 months ago

What's Changed

fix(app): Prevent crash when top datasets query returns no datasets by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2957
fix(server): Configure Elastic APM with an API key by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2958
Fix API crash caused by socket closed errors by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2959

Full Changelog: https://github.com/OpenNeuroOrg/openneuro/compare/v4.21.0...v4.21.1

v4.21.0

5 months ago

What's Changed

fix(worker): Handle missing snapshot trees better by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2913
fix(worker): Don't throw KeyError when auth token is missing 'name' field by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2914
chore(server): Cleanup unused GraphQL subscriptions by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2930
Fixes search by sex not catching 'M' and 'F' in participants.tsv by @ehavener in https://github.com/OpenNeuroOrg/openneuro/pull/2932
ci: Run coverage with GitHub actions by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2933
chore(deps): Bump @babel/traverse from 7.22.17 to 7.23.2 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2929
chore(deps): Bump get-func-name from 2.0.0 to 2.0.2 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2915
chore: Update to GraphQL 16.8.1 by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2934
chore(deps-dev): Bump cryptography from 41.0.3 to 41.0.4 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2901
Migrate server code to TypeScript by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2931
fix(cli): Prevent commander parsing from overriding git-annex-remote-openneuro by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2939
Support podman for local dev environments by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2942
fix(server): Allow /api in addition to /crn for API requests by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2943
chore(deps): Bump axios from 1.5.0 to 1.6.1 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2941
feat(dataset): Annex TSV files in phenotype directory by @effigies in https://github.com/OpenNeuroOrg/openneuro/pull/2940
fix(server): Allow authorization bearer token header for API access by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2944
Fix git-annex access issues for CLI by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2945
chore(deps): Bump @adobe/css-tools from 4.3.1 to 4.3.2 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2950
chore(deps-dev): Bump cryptography from 41.0.4 to 41.0.6 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2948
Add clickthrough agreement for downloads by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2947
chore(deps): Bump urllib3 from 1.26.16 to 1.26.18 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2927
deps(worker): Update lockfile Python deps by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2952
chore(deps-dev): Bump vite from 4.4.9 to 4.4.12 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2953
Helm configuration fixes for ElasticSearch 8.0 by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2954
deps(elasticsearch): Update NodeJS elasticsearch clients to 8.10.0 by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2955

New Contributors

@ehavener made their first contribution in https://github.com/OpenNeuroOrg/openneuro/pull/2932

Full Changelog: https://github.com/OpenNeuroOrg/openneuro/compare/v4.20.2...v4.21.0

v4.20.4

6 months ago

Fix CLI git-annex-remote-openneuro failing to run when set as the program name.

v4.20.2

7 months ago

Roll back bids-validator to 1.10.0 for server side validation

v4.20.1

7 months ago

What's Changed

fix(cli): Rollback bids-validator version by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2905
fix(app): Disable unused graphql-subscriptions on the client by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2904
fix(worker): Return 404 for missing datasets on draft or snapshot API calls by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2912

Full Changelog: https://github.com/OpenNeuroOrg/openneuro/compare/v4.20.0...v4.20.1

v4.20.0

7 months ago

What's Changed

The headline feature for this release is support for common derivatives uploads via the website (CLI support will be in an upcoming release).

chore(deps): Bump cryptography from 40.0.1 to 41.0.2 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2855
chore(deps): Bump semver from 5.7.1 to 5.7.2 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2850
chore(deps): Bump semver from 7.3.7 to 7.5.4 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2851
fix(app): Rename mock-content to content by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2852
DOC: Update docs to be more user-facing by @effigies in https://github.com/OpenNeuroOrg/openneuro/pull/2853
Fix typos detected by codespell by @effigies in https://github.com/OpenNeuroOrg/openneuro/pull/2854
refactor(app): Replace FAQ with documentation link and redirect by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2856
chore(deps): Bump mongoose from 6.2.3 to 6.11.3 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2857
refactor(server): Migrate summary and permission resolvers to TypeScript by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2858
reactor(app): Drop react-virtualized in favor of react-table by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2859
fix typo by @da5nsy in https://github.com/OpenNeuroOrg/openneuro/pull/2862
chore(deps): Bump word-wrap from 1.2.3 to 1.2.5 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2864
chore(deps): Bump certifi from 2023.5.7 to 2023.7.22 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2865
chore(deps-dev): Bump cryptography from 41.0.2 to 41.0.3 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2867
fix(scripts): Use command line authentication with s3-delete-all-versions script by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2870
All public dataset metadata page by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2863
fix(app): Prevent TextInput crash when value is undefined by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2871
deps: Update to Node 18.17.1 by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2876
chore(deps): Bump @adobe/css-tools from 4.0.1 to 4.3.1 by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2877
chore(deps): Bump gitpython from 3.1.31 to 3.1.32 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2872
fix(server): Set 4MB high water mark for streaming file responses by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2878
Apollo Server 4 Update by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2866
chore(deps): Bump @apollo/server from 4.8.1 to 4.9.3 in /packages/openneuro-server by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2885
chore(deps): Bump gitpython from 3.1.32 to 3.1.34 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2884
Update to yarn 3.6.3 by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2887
fix: TypeScript upgrade build fixes for 5.1.0 by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2888
Update to Vite 4.4.9 by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2890
fix: Revert Node.js containers to bullseye (libssl fixes) by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2891
fix(worker): Update to Python 3.11 by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2892
Enable schema validator for worker validation by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2894
chore(deps): Bump @xmldom/xmldom from 0.7.5 to 0.7.13 in /services/datalad by @dependabot in https://github.com/OpenNeuroOrg/openneuro/pull/2893
deps: Update to [email protected] by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2895
Enable schema validator for derivative datasets on client side uploads by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2897
feat(api): Return schema validator output for derivative datasets by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2896
deps(server): Drop moment.js in favor of date-fns by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2898
docs: Add steps to setup Kubernetes auth for existing clusters by @nellh in https://github.com/OpenNeuroOrg/openneuro/pull/2899

New Contributors

@da5nsy made their first contribution in https://github.com/OpenNeuroOrg/openneuro/pull/2862

Full Changelog: https://github.com/OpenNeuroOrg/openneuro/compare/v4.19.2...v4.20.0

v4.19.3

9 months ago

fix(app): Prevent TextInput crash when value is undefined

Full Changelog: https://github.com/OpenNeuroOrg/openneuro/compare/v4.19.2...v4.19.3