niftidataset

This package is deprecated in favor of torchio or MONAI and will no longer be supported

This package simply provides appropriate dataset and transforms classes for NIfTI images for use with PyTorch or PyTorch wrappers.

** Note that this is an alpha release. If you have feedback or problems, please submit an issue (it is very appreciated) **

Requirements

• nibabel >= 2.3.1
• numpy >= 1.15.4
• pillow >= 5.3.0
• torch >= 1.0.0
• torchvision >= 0.2.1

Installation

pip install git+git://github.com/jcreinhold/niftidataset.git

Tutorial

5 minute Overview

In addition to the above small tutorial, there is consolidated documentation here.

Test Package

Unit tests can be run from the main directory as follows:

nosetests -v tests