NeuroM Versions Save

Neuronal Morphology Analysis Tool

v3.2.11

2 weeks ago

What's Changed

Fix mpl.cm.get_cmap deprecation by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1122

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.10...v3.2.11

v3.2.10

1 month ago

What's Changed

Add check for overlapping points in neurites by @adrien-berchet in https://github.com/BlueBrain/NeuroM/pull/1115

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.9...v3.2.10

v3.2.9

1 month ago

What's Changed

Add back_tracking_segments() which is then called by is_back_tracking by @adrien-berchet in https://github.com/BlueBrain/NeuroM/pull/1112
Add has_no_back_tracking function by @adrien-berchet in https://github.com/BlueBrain/NeuroM/pull/1113
Make has_no_back_tracking() compatible with generate_annotation() by @adrien-berchet in https://github.com/BlueBrain/NeuroM/pull/1114

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.8...v3.2.9

v3.2.8

3 months ago

What's Changed

Replace pkg_resources with importlib in docs by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1104
fix sdist so pypi upload can happen by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1105
github action: fix var name for sdist upload by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1106
fix location of readme, update links for badges and banner by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1107

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.7...v3.2.8

v3.2.7

3 months ago

What's Changed

update contributors to match git logs by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1100
do not use master for github actions by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1101

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.6...v3.2.7

v3.2.6

3 months ago

What's Changed

update soma for new morphio 3.3.7 error by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1089
modernize to pyproject.toml by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1088
fix examples after move to v3 by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1091
Remove pyXX prefix for lint, docs, and coverage by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1092
Fix warnings in tests by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1093
Add proper spacing in morph_stats docstring config path by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1094
Fix tutorial & add tutorial testing by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1095
Add testing of example scripts (#1041) by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1096
Add testing for python3.12 by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1098
try updating .zenodo.json by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1099

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.5...v3.2.6

v3.2.5

5 months ago

What's Changed

Remove shebang lines by @musicinmybrain in https://github.com/BlueBrain/NeuroM/pull/1083
Replace PyPI mock test dependency with unittest.mock by @musicinmybrain in https://github.com/BlueBrain/NeuroM/pull/1084
Add Zenodo author list by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1086
Set readthedocs python to a version we know we have morphio wheels for by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1087

New Contributors

@musicinmybrain made their first contribution in https://github.com/BlueBrain/NeuroM/pull/1083

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.4...v3.2.5

v3.2.4

8 months ago

What's Changed

Fix Rectangle kwarg error due to matplotlib==3.8 by @eleftherioszisis in https://github.com/BlueBrain/NeuroM/pull/1082

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.3...v3.2.4

v3.2.3

8 months ago

What's Changed

Remove duplicated deps jinja, sphinx by @stefanoantonel in https://github.com/BlueBrain/NeuroM/pull/1043
Remove single point contour somas in h5 and asc tests by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1045
Check that soma is not empty when features need it by @adrien-berchet in https://github.com/BlueBrain/NeuroM/pull/1073
Keep in sync with morphio 3.3.6, and the new SWC types that are avail… by @mgeplf in https://github.com/BlueBrain/NeuroM/pull/1075
Can pass List[Population] args to neurom.app.morph_stats.extract_dataframe by @adrien-berchet in https://github.com/BlueBrain/NeuroM/pull/1076
Fix neurom.app.morph_stats.extract_dataframe for Population objects with several workers by @adrien-berchet in https://github.com/BlueBrain/NeuroM/pull/1080

New Contributors

@stefanoantonel made their first contribution in https://github.com/BlueBrain/NeuroM/pull/1043

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.0...v3.2.3

v3.2.2

1 year ago

What's Changed

Fix QhullError warning by @GianlucaFicarelli in https://github.com/BlueBrain/NeuroM/pull/1063

New Contributors

@GianlucaFicarelli made their first contribution in https://github.com/BlueBrain/NeuroM/pull/1063

Full Changelog: https://github.com/BlueBrain/NeuroM/compare/v3.2.1...v3.2.2