ncem

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.. |PyPI| image:: https://img.shields.io/pypi/v/ncem.svg :target: https://pypi.org/project/ncem/ :alt: PyPI .. |Python Version| image:: https://img.shields.io/pypi/pyversions/ncem :target: https://pypi.org/project/ncem :alt: Python Version .. |License| image:: https://img.shields.io/github/license/theislab/ncem :target: https://opensource.org/licenses/BSD-3-Clause :alt: License .. |Read the Docs| image:: https://img.shields.io/readthedocs/ncem/latest.svg?label=Read%20the%20Docs :target: https://ncem.readthedocs.io/ :alt: Read the documentation at https://ncem.readthedocs.io/ .. |Build| image:: https://github.com/theislab/ncem/workflows/Build%20ncem%20Package/badge.svg :target: https://github.com/theislab/ncem/actions?workflow=Package :alt: Build Package Status .. |Tests| image:: https://github.com/theislab/ncem/workflows/Run%20ncem%20Tests/badge.svg :target: https://github.com/theislab/ncem/actions?workflow=Tests :alt: Run Tests Status .. |Codecov| image:: https://codecov.io/gh/theislab/ncem/branch/master/graph/badge.svg :target: https://codecov.io/gh/theislab/ncem :alt: Codecov .. |pre-commit| image:: https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white :target: https://github.com/pre-commit/pre-commit :alt: pre-commit .. |Black| image:: https://img.shields.io/badge/code%20style-black-000000.svg :target: https://github.com/psf/black :alt: Black

.. image:: https://raw.githubusercontent.com/theislab/ncem/main/docs/_static/img/concept.png :target: https://raw.githubusercontent.com/theislab/ncem/main/docs/_static/img/concept.png :align: center :alt: ncem concept :width: 1000px

Features

ncem_ is a model repository in a single python package for the manuscript Fischer, D. S., Schaar, A. C. and Theis, F. Learning cell communication from spatial graphs of cells. 2021. (preprint_)

Installation

You can install ncem via pip_ from PyPI_:

.. code:: console

$ pip install ncem

Credits

This package was created with cookietemple_ using Cookiecutter_ based on Hypermodern_Python_Cookiecutter_.

.. _ncem: https://ncem.readthedocs.io .. _cookietemple: https://cookietemple.com .. _Cookiecutter: https://github.com/audreyr/cookiecutter .. _PyPI: https://pypi.org/ .. _Hypermodern_Python_Cookiecutter: https://github.com/cjolowicz/cookiecutter-hypermodern-python .. _pip: https://pip.pypa.io/ .. _Usage: https://ncem.readthedocs.io/en/latest/usage.html .. _preprint: https://www.biorxiv.org/content/10.1101/2021.07.11.451750v1