Mriqc Versions Save

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

24.0.0

1 month ago

What's Changed

FIX: Typo in sorted(..., reverse=True) call by @araikes in https://github.com/nipreps/mriqc/pull/1211
MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in https://github.com/nipreps/mriqc/pull/1214
CI: flake8 → ruff check by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1212
DOC: Add changelog to documentation by @oesteban in https://github.com/nipreps/mriqc/pull/1217
ENH: Revise summary stats extraction and include controlled roundings by @oesteban in https://github.com/nipreps/mriqc/pull/1219
ENH: Adds diffusion-related IQMs. by @arokem in https://github.com/nipreps/mriqc/pull/1131
ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1224
ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in https://github.com/nipreps/mriqc/pull/1225
ENH: Add new IQM for DWI -- NDC by @oesteban in https://github.com/nipreps/mriqc/pull/1226
ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in https://github.com/nipreps/mriqc/pull/1228
ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in https://github.com/nipreps/mriqc/pull/1227
ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in https://github.com/nipreps/mriqc/pull/1229
ENH: Move from DTI to DKI with multishell data by @oesteban in https://github.com/nipreps/mriqc/pull/1230
ENH: Add b-vector angular deviations as IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1233
FIX: Duplicate node in anatomical workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1234
ENH: Improve error handling and logging by @oesteban in https://github.com/nipreps/mriqc/pull/1238
FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in https://github.com/nipreps/mriqc/pull/1239
FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in https://github.com/nipreps/mriqc/pull/1240
FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in https://github.com/nipreps/mriqc/pull/1241
FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in https://github.com/nipreps/mriqc/pull/1242
FIX: Sloppy merge by @oesteban in https://github.com/nipreps/mriqc/pull/1243
FIX: Revise config save/load and update inputs after dropping by @oesteban in https://github.com/nipreps/mriqc/pull/1245
ENH: Expose a command-line option for minimum DWI volumes by @oesteban in https://github.com/nipreps/mriqc/pull/1249
FIX: Skip short BOLD runs that break outlier detection by @effigies in https://github.com/nipreps/mriqc/pull/1120
MAINT: Prevent pandas-originating deprecation warning by @oesteban in https://github.com/nipreps/mriqc/pull/1251
ENH: Improve logging of runtime by @oesteban in https://github.com/nipreps/mriqc/pull/1253
ENH: Improve documentation and logging of SynthStrip's model by @oesteban in https://github.com/nipreps/mriqc/pull/1254
MAINT: Clean up more FutureWarning issued by pandas by @oesteban in https://github.com/nipreps/mriqc/pull/1257
ENH: Mechanism to protect config's fields and write out config by @oesteban in https://github.com/nipreps/mriqc/pull/1258
FIX: Make sure new logs and config file output are compatible with parallel processes by @oesteban in https://github.com/nipreps/mriqc/pull/1259
FIX: Select filters if modalities are selected by @oesteban in https://github.com/nipreps/mriqc/pull/1261
FIX: Address issues that had broken the group reports by @oesteban in https://github.com/nipreps/mriqc/pull/1262
FIX: Enable group reports for DWI by @oesteban in https://github.com/nipreps/mriqc/pull/1266
Removed pre-commit from development dependencies by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1269
FIX: Finalized naming and connection of DWI IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1272
MAINT: Added ruff to development dependencies by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1271
FIX: Calculation of trivial shells by @oesteban in https://github.com/nipreps/mriqc/pull/1276
STY: Applied ruff formatting by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1273
ENH: Annotate nodes with n_procs to allow safe parallelization by @oesteban in https://github.com/nipreps/mriqc/pull/1277
FIX: Remove DataLad as a node by @oesteban in https://github.com/nipreps/mriqc/pull/1278
STY: Reformat with ruff by @oesteban in https://github.com/nipreps/mriqc/pull/1279
Fail for non-formatted code by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1274
REL: 24.0.0rc8 by @oesteban in https://github.com/nipreps/mriqc/pull/1280
FIX: Bug in toml loader crashing with mixed arrays in config by @oesteban in https://github.com/nipreps/mriqc/pull/1281

New Contributors

@araikes made their first contribution in https://github.com/nipreps/mriqc/pull/1211
@zvi-quantivly made their first contribution in https://github.com/nipreps/mriqc/pull/1269

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.1...24.0.0

24.0.0rc8

1 month ago

What's Changed

FIX: Typo in sorted(..., reverse=True) call by @araikes in https://github.com/nipreps/mriqc/pull/1211
MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in https://github.com/nipreps/mriqc/pull/1214
CI: flake8 → ruff check by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1212
DOC: Add changelog to documentation by @oesteban in https://github.com/nipreps/mriqc/pull/1217
ENH: Revise summary stats extraction and include controlled roundings by @oesteban in https://github.com/nipreps/mriqc/pull/1219
ENH: Adds diffusion-related IQMs. by @arokem in https://github.com/nipreps/mriqc/pull/1131
ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1224
ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in https://github.com/nipreps/mriqc/pull/1225
ENH: Add new IQM for DWI -- NDC by @oesteban in https://github.com/nipreps/mriqc/pull/1226
ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in https://github.com/nipreps/mriqc/pull/1228
ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in https://github.com/nipreps/mriqc/pull/1227
ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in https://github.com/nipreps/mriqc/pull/1229
ENH: Move from DTI to DKI with multishell data by @oesteban in https://github.com/nipreps/mriqc/pull/1230
ENH: Add b-vector angular deviations as IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1233
FIX: Duplicate node in anatomical workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1234
ENH: Improve error handling and logging by @oesteban in https://github.com/nipreps/mriqc/pull/1238
FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in https://github.com/nipreps/mriqc/pull/1239
FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in https://github.com/nipreps/mriqc/pull/1240
FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in https://github.com/nipreps/mriqc/pull/1241
FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in https://github.com/nipreps/mriqc/pull/1242
FIX: Sloppy merge by @oesteban in https://github.com/nipreps/mriqc/pull/1243
FIX: Revise config save/load and update inputs after dropping by @oesteban in https://github.com/nipreps/mriqc/pull/1245
ENH: Expose a command-line option for minimum DWI volumes by @oesteban in https://github.com/nipreps/mriqc/pull/1249
FIX: Skip short BOLD runs that break outlier detection by @effigies in https://github.com/nipreps/mriqc/pull/1120
MAINT: Prevent pandas-originating deprecation warning by @oesteban in https://github.com/nipreps/mriqc/pull/1251
ENH: Improve logging of runtime by @oesteban in https://github.com/nipreps/mriqc/pull/1253
ENH: Improve documentation and logging of SynthStrip's model by @oesteban in https://github.com/nipreps/mriqc/pull/1254
MAINT: Clean up more FutureWarning issued by pandas by @oesteban in https://github.com/nipreps/mriqc/pull/1257
ENH: Mechanism to protect config's fields and write out config by @oesteban in https://github.com/nipreps/mriqc/pull/1258
FIX: Make sure new logs and config file output are compatible with parallel processes by @oesteban in https://github.com/nipreps/mriqc/pull/1259
FIX: Select filters if modalities are selected by @oesteban in https://github.com/nipreps/mriqc/pull/1261
FIX: Address issues that had broken the group reports by @oesteban in https://github.com/nipreps/mriqc/pull/1262
FIX: Enable group reports for DWI by @oesteban in https://github.com/nipreps/mriqc/pull/1266
Removed pre-commit from development dependencies by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1269
FIX: Finalized naming and connection of DWI IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1272
MAINT: Added ruff to development dependencies by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1271
FIX: Calculation of trivial shells by @oesteban in https://github.com/nipreps/mriqc/pull/1276
STY: Applied ruff formatting by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1273
ENH: Annotate nodes with n_procs to allow safe parallelization by @oesteban in https://github.com/nipreps/mriqc/pull/1277
FIX: Remove DataLad as a node by @oesteban in https://github.com/nipreps/mriqc/pull/1278
STY: Reformat with ruff by @oesteban in https://github.com/nipreps/mriqc/pull/1279
Fail for non-formatted code by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1274

New Contributors

@araikes made their first contribution in https://github.com/nipreps/mriqc/pull/1211
@zvi-quantivly made their first contribution in https://github.com/nipreps/mriqc/pull/1269

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.1...24.0.0rc8

24.0.0rc7

1 month ago

What's Changed

FIX: Typo in sorted(..., reverse=True) call by @araikes in https://github.com/nipreps/mriqc/pull/1211
MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in https://github.com/nipreps/mriqc/pull/1214
CI: flake8 → ruff check by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1212
DOC: Add changelog to documentation by @oesteban in https://github.com/nipreps/mriqc/pull/1217
ENH: Revise summary stats extraction and include controlled roundings by @oesteban in https://github.com/nipreps/mriqc/pull/1219
ENH: Adds diffusion-related IQMs. by @arokem in https://github.com/nipreps/mriqc/pull/1131
ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1224
ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in https://github.com/nipreps/mriqc/pull/1225
ENH: Add new IQM for DWI -- NDC by @oesteban in https://github.com/nipreps/mriqc/pull/1226
ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in https://github.com/nipreps/mriqc/pull/1228
ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in https://github.com/nipreps/mriqc/pull/1227
ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in https://github.com/nipreps/mriqc/pull/1229
ENH: Move from DTI to DKI with multishell data by @oesteban in https://github.com/nipreps/mriqc/pull/1230
ENH: Add b-vector angular deviations as IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1233
FIX: Duplicate node in anatomical workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1234
ENH: Improve error handling and logging by @oesteban in https://github.com/nipreps/mriqc/pull/1238
FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in https://github.com/nipreps/mriqc/pull/1239
FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in https://github.com/nipreps/mriqc/pull/1240
FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in https://github.com/nipreps/mriqc/pull/1241
FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in https://github.com/nipreps/mriqc/pull/1242
FIX: Sloppy merge by @oesteban in https://github.com/nipreps/mriqc/pull/1243
FIX: Revise config save/load and update inputs after dropping by @oesteban in https://github.com/nipreps/mriqc/pull/1245
ENH: Expose a command-line option for minimum DWI volumes by @oesteban in https://github.com/nipreps/mriqc/pull/1249
FIX: Skip short BOLD runs that break outlier detection by @effigies in https://github.com/nipreps/mriqc/pull/1120
MAINT: Prevent pandas-originating deprecation warning by @oesteban in https://github.com/nipreps/mriqc/pull/1251
ENH: Improve logging of runtime by @oesteban in https://github.com/nipreps/mriqc/pull/1253
ENH: Improve documentation and logging of SynthStrip's model by @oesteban in https://github.com/nipreps/mriqc/pull/1254
MAINT: Clean up more FutureWarning issued by pandas by @oesteban in https://github.com/nipreps/mriqc/pull/1257
ENH: Mechanism to protect config's fields and write out config by @oesteban in https://github.com/nipreps/mriqc/pull/1258
FIX: Make sure new logs and config file output are compatible with parallel processes by @oesteban in https://github.com/nipreps/mriqc/pull/1259
FIX: Select filters if modalities are selected by @oesteban in https://github.com/nipreps/mriqc/pull/1261
FIX: Address issues that had broken the group reports by @oesteban in https://github.com/nipreps/mriqc/pull/1262
FIX: Enable group reports for DWI by @oesteban in https://github.com/nipreps/mriqc/pull/1266
Removed pre-commit from development dependencies by @zvi-quantivly in https://github.com/nipreps/mriqc/pull/1269
FIX: Finalized naming and connection of DWI IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1272

New Contributors

@araikes made their first contribution in https://github.com/nipreps/mriqc/pull/1211
@zvi-quantivly made their first contribution in https://github.com/nipreps/mriqc/pull/1269

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.1...24.0.0rc7

24.0.0rc6

1 month ago

What's Changed

FIX: Typo in sorted(..., reverse=True) call by @araikes in https://github.com/nipreps/mriqc/pull/1211
MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in https://github.com/nipreps/mriqc/pull/1214
CI: flake8 → ruff check by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1212
DOC: Add changelog to documentation by @oesteban in https://github.com/nipreps/mriqc/pull/1217
ENH: Revise summary stats extraction and include controlled roundings by @oesteban in https://github.com/nipreps/mriqc/pull/1219
ENH: Adds diffusion-related IQMs. by @arokem in https://github.com/nipreps/mriqc/pull/1131
ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1224
ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in https://github.com/nipreps/mriqc/pull/1225
ENH: Add new IQM for DWI -- NDC by @oesteban in https://github.com/nipreps/mriqc/pull/1226
ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in https://github.com/nipreps/mriqc/pull/1228
ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in https://github.com/nipreps/mriqc/pull/1227
ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in https://github.com/nipreps/mriqc/pull/1229
ENH: Move from DTI to DKI with multishell data by @oesteban in https://github.com/nipreps/mriqc/pull/1230
ENH: Add b-vector angular deviations as IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1233
FIX: Duplicate node in anatomical workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1234
ENH: Improve error handling and logging by @oesteban in https://github.com/nipreps/mriqc/pull/1238
FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in https://github.com/nipreps/mriqc/pull/1239
FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in https://github.com/nipreps/mriqc/pull/1240
FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in https://github.com/nipreps/mriqc/pull/1241
FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in https://github.com/nipreps/mriqc/pull/1242
FIX: Sloppy merge by @oesteban in https://github.com/nipreps/mriqc/pull/1243
FIX: Revise config save/load and update inputs after dropping by @oesteban in https://github.com/nipreps/mriqc/pull/1245
ENH: Expose a command-line option for minimum DWI volumes by @oesteban in https://github.com/nipreps/mriqc/pull/1249
FIX: Skip short BOLD runs that break outlier detection by @effigies in https://github.com/nipreps/mriqc/pull/1120
MAINT: Prevent pandas-originating deprecation warning by @oesteban in https://github.com/nipreps/mriqc/pull/1251
ENH: Improve logging of runtime by @oesteban in https://github.com/nipreps/mriqc/pull/1253
ENH: Improve documentation and logging of SynthStrip's model by @oesteban in https://github.com/nipreps/mriqc/pull/1254
MAINT: Clean up more FutureWarning issued by pandas by @oesteban in https://github.com/nipreps/mriqc/pull/1257
ENH: Mechanism to protect config's fields and write out config by @oesteban in https://github.com/nipreps/mriqc/pull/1258
FIX: Make sure new logs and config file output are compatible with parallel processes by @oesteban in https://github.com/nipreps/mriqc/pull/1259

New Contributors

@araikes made their first contribution in https://github.com/nipreps/mriqc/pull/1211

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.1...24.0.0rc6

24.0.0rc5

1 month ago

What's Changed

FIX: Typo in sorted(..., reverse=True) call by @araikes in https://github.com/nipreps/mriqc/pull/1211
MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in https://github.com/nipreps/mriqc/pull/1214
CI: flake8 → ruff check by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1212
DOC: Add changelog to documentation by @oesteban in https://github.com/nipreps/mriqc/pull/1217
ENH: Revise summary stats extraction and include controlled roundings by @oesteban in https://github.com/nipreps/mriqc/pull/1219
ENH: Adds diffusion-related IQMs. by @arokem in https://github.com/nipreps/mriqc/pull/1131
ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1224
ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in https://github.com/nipreps/mriqc/pull/1225
ENH: Add new IQM for DWI -- NDC by @oesteban in https://github.com/nipreps/mriqc/pull/1226
ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in https://github.com/nipreps/mriqc/pull/1228
ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in https://github.com/nipreps/mriqc/pull/1227
ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in https://github.com/nipreps/mriqc/pull/1229
ENH: Move from DTI to DKI with multishell data by @oesteban in https://github.com/nipreps/mriqc/pull/1230
ENH: Add b-vector angular deviations as IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1233
FIX: Duplicate node in anatomical workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1234
ENH: Improve error handling and logging by @oesteban in https://github.com/nipreps/mriqc/pull/1238
FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in https://github.com/nipreps/mriqc/pull/1239
FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in https://github.com/nipreps/mriqc/pull/1240
FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in https://github.com/nipreps/mriqc/pull/1241
FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in https://github.com/nipreps/mriqc/pull/1242
FIX: Sloppy merge by @oesteban in https://github.com/nipreps/mriqc/pull/1243
FIX: Revise config save/load and update inputs after dropping by @oesteban in https://github.com/nipreps/mriqc/pull/1245
ENH: Expose a command-line option for minimum DWI volumes by @oesteban in https://github.com/nipreps/mriqc/pull/1249
FIX: Skip short BOLD runs that break outlier detection by @effigies in https://github.com/nipreps/mriqc/pull/1120
MAINT: Prevent pandas-originating deprecation warning by @oesteban in https://github.com/nipreps/mriqc/pull/1251
ENH: Improve logging of runtime by @oesteban in https://github.com/nipreps/mriqc/pull/1253
ENH: Improve documentation and logging of SynthStrip's model by @oesteban in https://github.com/nipreps/mriqc/pull/1254
MAINT: Clean up more FutureWarning issued by pandas by @oesteban in https://github.com/nipreps/mriqc/pull/1257
ENH: Mechanism to protect config's fields and write out config by @oesteban in https://github.com/nipreps/mriqc/pull/1258

New Contributors

@araikes made their first contribution in https://github.com/nipreps/mriqc/pull/1211

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.1...24.0.0rc5

24.0.0rc4

1 month ago

What's Changed

FIX: Typo in sorted(..., reverse=True) call by @araikes in https://github.com/nipreps/mriqc/pull/1211
MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in https://github.com/nipreps/mriqc/pull/1214
CI: flake8 → ruff check by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1212
DOC: Add changelog to documentation by @oesteban in https://github.com/nipreps/mriqc/pull/1217
ENH: Revise summary stats extraction and include controlled roundings by @oesteban in https://github.com/nipreps/mriqc/pull/1219
ENH: Adds diffusion-related IQMs. by @arokem in https://github.com/nipreps/mriqc/pull/1131
ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1224
ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in https://github.com/nipreps/mriqc/pull/1225
ENH: Add new IQM for DWI -- NDC by @oesteban in https://github.com/nipreps/mriqc/pull/1226
ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in https://github.com/nipreps/mriqc/pull/1228
ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in https://github.com/nipreps/mriqc/pull/1227
ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in https://github.com/nipreps/mriqc/pull/1229
ENH: Move from DTI to DKI with multishell data by @oesteban in https://github.com/nipreps/mriqc/pull/1230
ENH: Add b-vector angular deviations as IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1233
FIX: Duplicate node in anatomical workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1234
ENH: Improve error handling and logging by @oesteban in https://github.com/nipreps/mriqc/pull/1238
FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in https://github.com/nipreps/mriqc/pull/1239
FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in https://github.com/nipreps/mriqc/pull/1240
FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in https://github.com/nipreps/mriqc/pull/1241
FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in https://github.com/nipreps/mriqc/pull/1242
FIX: Sloppy merge by @oesteban in https://github.com/nipreps/mriqc/pull/1243
FIX: Revise config save/load and update inputs after dropping by @oesteban in https://github.com/nipreps/mriqc/pull/1245
ENH: Expose a command-line option for minimum DWI volumes by @oesteban in https://github.com/nipreps/mriqc/pull/1249
FIX: Skip short BOLD runs that break outlier detection by @effigies in https://github.com/nipreps/mriqc/pull/1120

New Contributors

@araikes made their first contribution in https://github.com/nipreps/mriqc/pull/1211

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.1...24.0.0rc4

24.0.0rc3

1 month ago

What's Changed

FIX: Typo in sorted(..., reverse=True) call by @araikes in https://github.com/nipreps/mriqc/pull/1211
MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in https://github.com/nipreps/mriqc/pull/1214
CI: flake8 → ruff check by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1212
DOC: Add changelog to documentation by @oesteban in https://github.com/nipreps/mriqc/pull/1217
ENH: Revise summary stats extraction and include controlled roundings by @oesteban in https://github.com/nipreps/mriqc/pull/1219
ENH: Adds diffusion-related IQMs. by @arokem in https://github.com/nipreps/mriqc/pull/1131
ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1224
ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in https://github.com/nipreps/mriqc/pull/1225
ENH: Add new IQM for DWI -- NDC by @oesteban in https://github.com/nipreps/mriqc/pull/1226
ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in https://github.com/nipreps/mriqc/pull/1228
ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in https://github.com/nipreps/mriqc/pull/1227
ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in https://github.com/nipreps/mriqc/pull/1229
ENH: Move from DTI to DKI with multishell data by @oesteban in https://github.com/nipreps/mriqc/pull/1230
ENH: Add b-vector angular deviations as IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1233
FIX: Duplicate node in anatomical workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1234
ENH: Improve error handling and logging by @oesteban in https://github.com/nipreps/mriqc/pull/1238
FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in https://github.com/nipreps/mriqc/pull/1239
FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in https://github.com/nipreps/mriqc/pull/1240
FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in https://github.com/nipreps/mriqc/pull/1241
FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in https://github.com/nipreps/mriqc/pull/1242
FIX: Sloppy merge by @oesteban in https://github.com/nipreps/mriqc/pull/1243

New Contributors

@araikes made their first contribution in https://github.com/nipreps/mriqc/pull/1211

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.1...24.0.0rc3

24.0.0rc2

1 month ago

What's Changed

FIX: Typo in sorted(..., reverse=True) call by @araikes in https://github.com/nipreps/mriqc/pull/1211
MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in https://github.com/nipreps/mriqc/pull/1214
CI: flake8 → ruff check by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1212
DOC: Add changelog to documentation by @oesteban in https://github.com/nipreps/mriqc/pull/1217
ENH: Revise summary stats extraction and include controlled roundings by @oesteban in https://github.com/nipreps/mriqc/pull/1219
ENH: Adds diffusion-related IQMs. by @arokem in https://github.com/nipreps/mriqc/pull/1131
ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1224
ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in https://github.com/nipreps/mriqc/pull/1225
ENH: Add new IQM for DWI -- NDC by @oesteban in https://github.com/nipreps/mriqc/pull/1226
ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in https://github.com/nipreps/mriqc/pull/1228
ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in https://github.com/nipreps/mriqc/pull/1227
ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in https://github.com/nipreps/mriqc/pull/1229
ENH: Move from DTI to DKI with multishell data by @oesteban in https://github.com/nipreps/mriqc/pull/1230
ENH: Add b-vector angular deviations as IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1233
FIX: Duplicate node in anatomical workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1234
ENH: Improve error handling and logging by @oesteban in https://github.com/nipreps/mriqc/pull/1238
FIX: Avert costly BIDSLayout.__repr__ calls when saving config by @oesteban in https://github.com/nipreps/mriqc/pull/1239
FIX: Exclude DWI runs with insufficient orientations or missing bvals by @oesteban in https://github.com/nipreps/mriqc/pull/1240
FIX: Handle NUMEXPR_MAX_THREADS like OMP_NUM_THREADS by @oesteban in https://github.com/nipreps/mriqc/pull/1241
FIX: Drift should not be estimated when less than three low-b volumes present by @oesteban in https://github.com/nipreps/mriqc/pull/1242
FIX: Sloppy merge by @oesteban in https://github.com/nipreps/mriqc/pull/1243

New Contributors

@araikes made their first contribution in https://github.com/nipreps/mriqc/pull/1211

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.1...24.0.0rc2

24.0.0rc1

1 month ago

What's Changed

FIX: Typo in sorted(..., reverse=True) call by @araikes in https://github.com/nipreps/mriqc/pull/1211
MAINT: Update contributor affiliation in CONTRIBUTORS.md by @oesteban in https://github.com/nipreps/mriqc/pull/1214
CI: flake8 → ruff check by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1212
DOC: Add changelog to documentation by @oesteban in https://github.com/nipreps/mriqc/pull/1217
ENH: Revise summary stats extraction and include controlled roundings by @oesteban in https://github.com/nipreps/mriqc/pull/1219
ENH: Adds diffusion-related IQMs. by @arokem in https://github.com/nipreps/mriqc/pull/1131
ENH: Add computation of spiking voxels mask and percent IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1224
ENH: Add FA-based IQMs (nans percentage and degenerate percentage) by @oesteban in https://github.com/nipreps/mriqc/pull/1225
ENH: Add new IQM for DWI -- NDC by @oesteban in https://github.com/nipreps/mriqc/pull/1226
ENH: Use MAD for robust estimation of sigma in the CC mask by @oesteban in https://github.com/nipreps/mriqc/pull/1228
ENH: Integrate PIESNO noise mask and sigma estimation by @oesteban in https://github.com/nipreps/mriqc/pull/1227
ENH: Noise floor estimated with PCA (dwidenoise) as an IQM by @oesteban in https://github.com/nipreps/mriqc/pull/1229
ENH: Move from DTI to DKI with multishell data by @oesteban in https://github.com/nipreps/mriqc/pull/1230
ENH: Add b-vector angular deviations as IQMs by @oesteban in https://github.com/nipreps/mriqc/pull/1233
FIX: Duplicate node in anatomical workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1234

New Contributors

@araikes made their first contribution in https://github.com/nipreps/mriqc/pull/1211

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.1...24.0.0rc1

23.1.1

1 month ago

Release Notes

A long-overdue hotfix release addressing many bugs generated during the development of the new dMRI workflows and some relating to improvements in handling multi-echo fMRI. The release also includes one year of maintenance actions and a general code cleanup with Ruff.

What's Changed

FIX: Missing connection to head-motion estimation node in DWI workflow by @oesteban in https://github.com/nipreps/mriqc/pull/1207
FIX: Revise porting to Loader by @oesteban in https://github.com/nipreps/mriqc/pull/1201
FIX: Revise the last two sloppy merges by @oesteban in https://github.com/nipreps/mriqc/pull/1200
FIX: Move from pkg_resources to niworkflows.data.Loader by @oesteban in https://github.com/nipreps/mriqc/pull/1199
FIX: DIPY not listed as a dependency by @oesteban in https://github.com/nipreps/mriqc/pull/1197
FIX: Include dwidenoise within Docker image by @oesteban in https://github.com/nipreps/mriqc/pull/1196
FIX: Copy name attribute of dataset_description.json from input dataset by @celprov in https://github.com/nipreps/mriqc/pull/1187
FIX: Remove FD as an iterfield in MapNode causing crash with ME-BOLD by @celprov in https://github.com/nipreps/mriqc/pull/1179
FIX: Incorrect plugin metadata passed to Report Assembler by @oesteban in https://github.com/nipreps/mriqc/pull/1188
FIX: Temporary fix of the missing "dwi" key by @celprov in https://github.com/nipreps/mriqc/pull/1174
FIX: Rearrange multi-echo report by @celprov in https://github.com/nipreps/mriqc/pull/1164
FIX: Typo in inputnode field in dMRI masking workflow by @celprov in https://github.com/nipreps/mriqc/pull/1165
FIX: Bug in group level workflow by @celprov in https://github.com/nipreps/mriqc/pull/1148
FIX: Bugs in DWI workflow by @celprov in https://github.com/nipreps/mriqc/pull/1147
FIX: Use simpler DWI reference workflow by @yibeichan in https://github.com/nipreps/mriqc/pull/1145
FIX: Drop deprecated Networkx's API by @celprov in https://github.com/nipreps/mriqc/pull/1137
FIX: Replace np.float by np.float64 by @celprov in https://github.com/nipreps/mriqc/pull/1140
ENH: Improved logging and optimize early checkpoint on subjects by @oesteban in https://github.com/nipreps/mriqc/pull/1198
ENH: Store confound timeseries data by @psadil in https://github.com/nipreps/mriqc/pull/1166
ENH: Large overhaul of the functional workflow w/focus on ME-EPI by @oesteban in https://github.com/nipreps/mriqc/pull/1155
ENH: Implement BIDS filters file and drop legacy BIDS querying by @oesteban in https://github.com/nipreps/mriqc/pull/1154
ENH: Swap background and zoomed-in visualizations in anatomical reports by @oesteban in https://github.com/nipreps/mriqc/pull/1151
MAINT: Test on Python 3.12 by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1156
MAINT: Disable flaky T1w test on CircleCI by @oesteban in https://github.com/nipreps/mriqc/pull/1202
MAINT: Overhaul of the Dockerfile by @oesteban in https://github.com/nipreps/mriqc/pull/1195
MAINT: Revise package's extra dependencies by @oesteban in https://github.com/nipreps/mriqc/pull/1194
MAINT: Clean up some setuptools_scm remnants by @oesteban in https://github.com/nipreps/mriqc/pull/1193
MAINT: Load FMRISummary from NiReports rather than NiWorkflows by @celprov in https://github.com/nipreps/mriqc/pull/1167
MAINT: Update to latest migas' API by @mgxd in https://github.com/nipreps/mriqc/pull/1160
MAINT: Update bold to large resource class in config.yml by @oesteban in https://github.com/nipreps/mriqc/pull/1158
MAINT: Refresh cached intermediate results by @oesteban in https://github.com/nipreps/mriqc/pull/1143
MAINT: Simplify GitHub actions checks and update action versions by @effigies in https://github.com/nipreps/mriqc/pull/1141
MAINT: Python 3.11 is supported by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1123
MAINT: Apply suggestions from pyupgrade by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1124
DOC: Update Sphinx pinned version to 5 by @oesteban in https://github.com/nipreps/mriqc/pull/1192
DOC: https://github.com/nipreps/mriqc/pull/1126 in https://github.com/nipreps/mriqc/pull/1126
DOC: Add info on the FreeSurfer requirement for bare install to address #1034 by @neurorepro in https://github.com/nipreps/mriqc/pull/1130
STY: Add Ruff config and fix all warnings and errors by @oesteban in https://github.com/nipreps/mriqc/pull/1203
STY: Remove extraneous parentheses by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1186
STY: Apply a few refurb suggestions by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1162
STY: Fix typo found by codespell by @DimitriPapadopoulos in https://github.com/nipreps/mriqc/pull/1161

New Contributors

@neurorepro made their first contribution in https://github.com/nipreps/mriqc/pull/1130
@DimitriPapadopoulos made their first contribution in https://github.com/nipreps/mriqc/pull/1126
@yibeichan made their first contribution in https://github.com/nipreps/mriqc/pull/1145

Full Changelog: https://github.com/nipreps/mriqc/compare/23.1.0...23.1.1