Morphomatics Versions Save

Geometric morphometrics in non-Euclidean shape spaces.

v3.0.2

3 months ago

Second microrelease of Morphomatics 3 Lucid Livia.

Notable changes:

  • Added affine invariant metric for space of symmetric positive definite matrices
  • Numerical safeguards for automatic differentiation

Complete list of changes here.

v3.0

1 year ago

Third major release (aka Lucid Livia) of the Morphomatics library.

Major additions revolve around longitudinal modeling including:

  • generic tangent bundle manifold with natural Sasaki metric,
  • new Bézierfold of cubic splines based on product Sasaki metric,
  • hyperbolic space, and
  • Metric now subclass of Connection.

See Commits for a detailed list of changes.

v2.1.1

1 year ago

Patch release fixing PointDistributionModel and dropping Python 3.7 support.

v2.1

1 year ago

Minor release containing among others:

  • new opt package with very basic (but jax compatible) optimization and root finding routines
  • time-discretze Riemannian exp/log in Bezierfold
  • performance improvements due to just-in-time compatible solver in RiemannianRegression and Bezierfold
  • pymanopt now optional dependency

Detailed list of changes: Commits

v2.0

1 year ago

Second major release (aka Accelerated Augustus) of the Morphomatics library.

Biggest change is the adoption of the jax framework for computing and statistics on manifolds, bringing

  • automatic differentiation, and
  • compilation and execution on accelerators (GPUs and TPUs).

See Commits for a detailed list of changes.

v1.1

2 years ago

Major additions include:

  • Bézierfold: Manifold of Riemannian Bézier Splines
  • Higher-order hierarchichal model for analysis of longitudinal data (i.e. collection of time-dependent objects)
  • n-dim. Kendall shape space For a full list of changes see Commits.

See morphomatics.github.io for an overview of features and tutorials.

v1.0

2 years ago

First release (aka Curious Ceasar) of the Morphomatics library.

See morphomatics.github.io for an overview of features and tutorials.

Full Changelog: https://github.com/morphomatics/morphomatics/commits/v1.0