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Fixed a bug in the ps_venn/ps_euler functions. When running with plot=FALSE some taxa were falsely omitted in the output when group had more than 3 levels.

ps_venn and ps_euler can now return a list of shared and unique taxa across groups, when run with plot=FALSE

Add CLR transformation function, with built-in multiplicative zero-replacement

Added ps_clean_tax function

• A few bug fixes
• Add a pruning function
• Add extra functionality to some functions

• Added a function for drawing Venn diagrams of shared taxa/ASVs/OTUs across sample groups from a phyloseq object
• Changed name of phylo_euler to ps_euler

• Added a function for drawing Euler diagrams of shared taxa/ASVs/OTUs across sample groups from a phyloseq object

• Added (partial) omega-squared calculation of effect sizes for PERMANOVA (adonis) models
• Added a (theoretical) rarefaction curve function for phyloseq objects

Update for Travis CI

Added parallel versions of the ses.mpd and ses.mntd functions from the picante package: ses.mpd.par and ses.mntd.par