LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
This release hewm2008/LDBlockShow-1.40.tar.gz is stable and fast.
A can deal with >1w sites .
B and also can take D' as a statistic to replace r2
C Three color gradient
D new plot algorithm reduces output file saving
E can take plinks to cal the block.
F can read plinks format [-InPlink] : InPut Plink [bed+bim+fam] or [ped+map] file prefix
G If there is an SVG package in the system, use the system directly, if not, load the built-in program
H More low RAD mem.
J Can show the names of interested SNPs by input files
K heatmap+Annotation+GWAS similar to LocusZoom
L :fix a bug in the 1.36
M: modify the default value of Filter Para [-Het] to :1.0 ,and creat a new Filter parameter -HWE 0 [Hardy-Weinberg Equilibrium]
if any bug and suggest please contact hewm2008
Linux/MaxOS Download LDBlockShow-1.40.tar.gz
This release LDBlockShow-1.39.tar.gz is stable and fast.
A can deal with >1w sites .
B and also can take D' as a statistic to replace r2
C Three color gradient
D new plot algorithm reduces output file saving
E can take plinks to cal the block.
F can read plinks format [-InPlink] : InPut Plink [bed+bim+fam] or [ped+map] file prefix
G If there is an SVG package in the system, use the system directly, if not, load the built-in program
H More low RAD mem.
J Can show the names of interested SNPs by input files
K heatmap+Annotation+GWAS similar to LocusZoom
L :fix a bug in the 1.36
if any bug and suggest please contact hewm2008
Linux/MaxOS Download LDBlockShow-1.39.tar.gz
This release LDBlockShow-1.36.tar.gz is stable and fast.
A can deal with >1w sites .
B and also can take D' as a statistic to replace r2
C Three color gradient
D new plot algorithm reduces output file saving
E can take plinks to cal the block.
F can read plinks format [-InPlink] : InPut Plink [bed+bim+fam] or [ped+map] file prefix
G If there is an SVG package in the system, use the system directly, if not, load the built-in program
H More low RAD mem.
J Can show the names of interested SNPs by input files
K heatmap+Annotation+GWAS similar to LocusZoom
if any bug and suggest please contact hewm2008
Linux/MaxOS Download LDBlockShow-1.36.tar.gz
This release LDBlockShow-1.32.tar.gz is stable and fast.
A can deal with >1w sites .
B and also can take D' as a statistic to replace r2
C Three color gradient
D new plot algorithm reduces output file saving
E can take plinks to cal the block.
F can read plinks format [-InPlink] : InPut Plink [bed+bim+fam] or [ped+map] file prefix
G If there is an SVG package in the system, use the system directly, if not, load the built-in program
H More low RAD mem.
if any bug and suggest please contact hewm2008
Linux/MaxOS Download LDBlockShow-1.32.tar.gz