Kover Versions Save

Learn interpretable computational phenotyping models from k-merized genomic data

v2.0.7

1 year ago

Bug fixes

  • Fixed issue that prevented the k-mer counting tools to be built in the Docker image.

v2.0.6-1

1 year ago

Bug fixes

Fixes issue https://github.com/aldro61/kover/issues/54:

  • A minor bug that caused the first absence(kmer) rule's utility to not be computed correctly.
  • An issue that caused the SCM code to crash when the learned model was empty (due to no rule being predictive).

v2.0.3

5 years ago

New features

  • Fixed installation issues for DSK which prevented dataset creation from FASTA and FASTQ files.
  • Minor code cleanup

v2.0.1

5 years ago

New features

  • Fixed some problems with the installer
  • Dockerfile that installs Kover
  • Docker image with Kover preinstalled (https://hub.docker.com/r/aldro61/kover)
  • DockerHub automatic building of releases
  • Minor documentation updates

v2.0.0

5 years ago

This is the official release of Kover 2.0.0.

New features

  • Decision tree learning with the Classification and Regression Trees algorithm (Breiman et al., 1984).
  • Multi-class classification for categorical phenotypes with more than two states

v2.0.0-beta

5 years ago

New features

  • Decision tree learning with the Classification and Regression Trees algorithm (Breiman et al., 1984).
  • Multi-class classification for categorical phenotypes with more than two states

Notes

  • This is a beta release.

  • The Kover 2 code has now been merged into the master branch and the documentation has been updated.

  • The implementation has been extensively tested, but errors may still occur. Please report any runtime errors to the developers.

2.0.0-alpha

5 years ago

New features

  • Decision tree learning with the Classification and Regression Trees algorithm (Breiman et al., 1984).
  • Multi-class classification for categorical phenotypes with more than two states

Pre-release

This is a pre-release. The production-ready version will be released once it has been merged with Master.

1.3.2

6 years ago

Bug fix

Fixed a bug that caused the backend to crash when using bound selection.

1.3.1

6 years ago

Change log

  • Speed up the parsing of k-mer blacklists
  • Fixed a bug in the scoring of rules that occurred when using a k-mer blacklist

1.3.0

6 years ago

New features

k-mer blacklisting

  • Define a list of k-mers that are not to be selected by the learning algorithm
  • Supported formats: fasta, text file with one k-mer per line