Kgx Versions Save

KGX is a Python library for exchanging Knowledge Graphs

1.5.3

2 years ago
  • remove pystache requirement

1.5.1

2 years ago
  • Keep track of edge properties in owl source

1.5.0

2 years ago
  • Support mixins in ancestors hierarchy
  • Invalidate mixins as categories
  • Maintenance and bug fixes

1.4.0

2 years ago
  • This version replaces the previously hard-coded config.yaml Biolink Model release number with use of the current Biolink Model Toolkit default model release value.
  • Users of the KGX 'validate' functionality can also reset the Biolink Model (SemVer) release number at the CLI, and programmatically, with the Validator.set_biolink_model() class method.
  • KGX made Biolink Model 2.0++ aware with respect to new provenance slots - knowledge_source and its descendant slot definitions. These slot properties need to be explicitly specified in the Transformer.transform input_args dictionary.
  • Some support for heuristic auto-generation of candidate format-compliant CURIES Biolink Model 2.0++ Information Resource ("InfoRes") CURIES. The new code also provides a regular expression and meta-data based rewrite of knowledge source names into such CURIES.
  • Some additional clarification in the 'readTheDocs' documentation including for 1.3.0 streaming release features.

1.3.0

2 years ago
  • Add streaming option to validation

1.2.0

2 years ago
  • Update BMT to 0.7.2
  • Update LinkML to 1.0.0
  • Pin some major release versions in requirements.txt

1.1.0

2 years ago
  • Migrate to LinkML from BiolinkML

1.0.0

3 years ago
  • Fix bug with caching records in RdfSource
  • Add shortcuts for arguments in all CLI operations
  • Fix usage in CLI

1.0.0b0

3 years ago
  • Fixed caching bug in RdfSource
  • Fixed bug when setting 'provided_by' for a source

1.0.0a0

3 years ago
  • Added Source implementation for reading from various data stores
  • Added Sink implementation for writing to various data stores
  • Added a simplified Transformer that is agnostic
  • Refactor KGX to make use of Sources and Sinks
  • Added ability to stream graphs (Thanks to @gregr for the inspiration)