Jwst Versions Save

Python library for science observations from the James Webb Space Telescope

1.14.0

1 month ago

What's Changed

Reset requirements-sdp.txt after release by @jhunkeler in https://github.com/spacetelescope/jwst/pull/8175
fixed docstring typo; testing PR workflow by @emolter in https://github.com/spacetelescope/jwst/pull/8178
JP-3505: Update ASN rules for NRS MOS compromise dither patterns by @hbushouse in https://github.com/spacetelescope/jwst/pull/8184
JP-3501: Turn off emicorr by default by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8171
JP-3503: Update outlier detection docs by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8177
JP-3504: Bugfix for MRS 1d residual fringe correction by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8180
Update sregion at the end of TweakRegStep by @izkgao in https://github.com/spacetelescope/jwst/pull/8158
JP-3228: Remove 'grow' param from outlier_detection by @hbushouse in https://github.com/spacetelescope/jwst/pull/8190
remove sphinx-asdf requirement by @braingram in https://github.com/spacetelescope/jwst/pull/8196
Update RTD installation instructions by @hbushouse in https://github.com/spacetelescope/jwst/pull/8200
JP-3088 updated bunit_data for the top multislit model by @jemorrison in https://github.com/spacetelescope/jwst/pull/8189
JP-3510: Use all groups to flag bad IRS2 reference pixels by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8197
JP-3238: Include dispersion factor in PHOTOM correction for NRC grism by @stscirij in https://github.com/spacetelescope/jwst/pull/8207
JP-3509: Cut cube collapse for autocentroiding short of 26 microns by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8199
JP-2259: Tweakreg source finding by @emolter in https://github.com/spacetelescope/jwst/pull/8203
require photutils 1.5+ by @braingram in https://github.com/spacetelescope/jwst/pull/8211
Update min version of tweakwcs to 0.8.6 by @hbushouse in https://github.com/spacetelescope/jwst/pull/8216
JP-3510: Flag bad refpix within integrations separately by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8214
Add a warning message in Log to cube_build if not valid data is found on detector by @jemorrison in https://github.com/spacetelescope/jwst/pull/8220
switch to sphinx rtd theme by @braingram in https://github.com/spacetelescope/jwst/pull/8224
update regtest conftest for pytest 8 by @braingram in https://github.com/spacetelescope/jwst/pull/8245
Silence resample test warning by using non-zero data by @jdavies-st in https://github.com/spacetelescope/jwst/pull/8251
JP-3515: Spec2Pipeline turns off NSClean for BOTS by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8256
JP-3532: MRS 1d residual fringe treatment of negative values by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8261
JP-3325: bypass extract1d for SOSS observations in FULL subarray by @emolter in https://github.com/spacetelescope/jwst/pull/8225
JP-3247: Retrieve pixel area from AREA reference file by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8187
remove unused test data files by @braingram in https://github.com/spacetelescope/jwst/pull/8266
Release metadata for 1.13.4 by @jhunkeler in https://github.com/spacetelescope/jwst/pull/8271
JP-3488 Input files to outlier_detection accidentally deleted by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8263
JP-3223: Extract_2d 'slit_name' parameter fails for NRS_MSASPEC slits by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8272
JP-3499: Handle too much masked data for NIRISS SOSS extractions in extract_1d by @emolter in https://github.com/spacetelescope/jwst/pull/8265
Update stcal requirement to 1.6.0 by @hbushouse in https://github.com/spacetelescope/jwst/pull/8276
Fix: models_grouped always return opened data models by @mcara in https://github.com/spacetelescope/jwst/pull/8191
Use the same iscale value for resampling science data and variance arrays by @izkgao in https://github.com/spacetelescope/jwst/pull/8159
JP-3483: fix atoca failures due to sparse matrix solver by @emolter in https://github.com/spacetelescope/jwst/pull/8273
Fix NIRISS imaging regression test by @hbushouse in https://github.com/spacetelescope/jwst/pull/8277
use tuple of exception classes instead of or by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8267
JP-3525: Update jump and ramp_fitting docs to merge with stcal docs by @hbushouse in https://github.com/spacetelescope/jwst/pull/8253
Add SlicedLowLevelWCS support to reproject and fix a bug by @izkgao in https://github.com/spacetelescope/jwst/pull/8172
JP-3290 Isolate candidate processing into their own pools by @stscieisenhamer in https://github.com/spacetelescope/jwst/pull/8227
Convert tweakreg segmentation connectivity to integer by @jdavies-st in https://github.com/spacetelescope/jwst/pull/8309
JP-3539: replace all instances of deprecated scipy interp2d by @emolter in https://github.com/spacetelescope/jwst/pull/8291
Suppress warnings about NaNs in input data from TweakRegStep by @jdavies-st in https://github.com/spacetelescope/jwst/pull/8308
Add option to preserve reference pixels after IRS2 processing by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8255
Don't test specific log formatting for spec by @jdavies-st in https://github.com/spacetelescope/jwst/pull/8317
JP-3423: fixed array shape mismatch in pixel_replace mingrad algorithm by @emolter in https://github.com/spacetelescope/jwst/pull/8312
increase stdatamodels pins by @braingram in https://github.com/spacetelescope/jwst/pull/8322
Delete jump step unit test that has been moved to STCAL by @mwregan2 in https://github.com/spacetelescope/jwst/pull/8319
JP-3540: remove migrate_data and move_wcs scripts by @emolter in https://github.com/spacetelescope/jwst/pull/8321
JP-3437: Address alternating column noise for NIRSpec IRS2 by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8143
pin pytest <8.1 by @braingram in https://github.com/spacetelescope/jwst/pull/8328
JP-3553: Update background step handling of multi-ints exposures by @hbushouse in https://github.com/spacetelescope/jwst/pull/8326
replace check_memory_allocation in resample by @braingram in https://github.com/spacetelescope/jwst/pull/8324
import bytes2human directly from stdatamodels by @braingram in https://github.com/spacetelescope/jwst/pull/8325
JP-2090: Update set_velocity_aberration to use DataModel by @emolter in https://github.com/spacetelescope/jwst/pull/8285
JP-3465: Use TMEASURE in resample step by @emolter in https://github.com/spacetelescope/jwst/pull/8212
JP-3492 LRS spectral images contain pixels with NaN values and DQ = 0 by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8292
bump gwcs pins by @braingram in https://github.com/spacetelescope/jwst/pull/8337
JP-3560: Updating CHARGELOSS Flagging by @kmacdonald-stsci in https://github.com/spacetelescope/jwst/pull/8336
JP-3088 fix bunit_data and bunit_err for MOS data products by @jemorrison in https://github.com/spacetelescope/jwst/pull/8294
JP-3541: fixed tweakreg step KeyError due to empty gaia catalog by @emolter in https://github.com/spacetelescope/jwst/pull/8334
JP-3463: Add average_dark_current handling to dark_current step by @tapastro in https://github.com/spacetelescope/jwst/pull/8302
Jp-3169 store aperture location in FITS header by @jemorrison in https://github.com/spacetelescope/jwst/pull/8278
Remove tophat kernel as an available option for resample kernel by @mcara in https://github.com/spacetelescope/jwst/pull/8364
JP-3534 update to Sky Match docs by @jemorrison in https://github.com/spacetelescope/jwst/pull/8356
update load_local_pkg exclude regex with regtest pattern by @braingram in https://github.com/spacetelescope/jwst/pull/8350
JP-3552: use tmp_path instead of tmpdir, enable no:legacypath as a tox factor by @emolter in https://github.com/spacetelescope/jwst/pull/8327
JP-3445: Exclude NINTS=1 from SOSS TSO3 associations by @hbushouse in https://github.com/spacetelescope/jwst/pull/8359
Remove upper pytest pin, switch globals use to fixture in stpipe test by @braingram in https://github.com/spacetelescope/jwst/pull/8347
JP-2943:Level_3 error: cannot reshape array in image3 pipeline by @stscirij in https://github.com/spacetelescope/jwst/pull/8305
JP-3533 Update emicorr to run on FAST mode MIRI data by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8270
JP-3527 Update to docs for IFU outlier detection by @jemorrison in https://github.com/spacetelescope/jwst/pull/8360
Fix bug in emicorr logic for finding matching ref file info by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8375
JP-3352 update residual fringe documentation by @jemorrison in https://github.com/spacetelescope/jwst/pull/8371
JP-3550: Jump multi int by @mwregan2 in https://github.com/spacetelescope/jwst/pull/8304
JP-3562: Extend snowball core by @mwregan2 in https://github.com/spacetelescope/jwst/pull/8303
JP-3546: fix deprecations and improve warning filtering by @emolter in https://github.com/spacetelescope/jwst/pull/8320
[SCSB-145] require Python 3.10 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8365
update metadata for 1.14.0 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8380
JP-3153: post-commissioning AMI3 updates by @rcooper295 in https://github.com/spacetelescope/jwst/pull/7862
fix fixture for closedfile regtest by @braingram in https://github.com/spacetelescope/jwst/pull/8387
fix issues flagged by SonarQube by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8391
update metadata for release by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8396

New Contributors

@emolter made their first contribution in https://github.com/spacetelescope/jwst/pull/8178
@rcooper295 made their first contribution in https://github.com/spacetelescope/jwst/pull/7862

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.13.4...1.14.0

1.13.4

3 months ago

What's Changed

metadata for 1.13.4 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8222
JP-3501: Turn off emicorr by default by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8171

New Contributors

@drlaw1558 made their first contribution in https://github.com/spacetelescope/jwst/pull/8171

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.13.3...1.13.4

1.13.3

4 months ago

What's Changed

RampFitStep - accept integer values for maximum_cores by @izkgao in https://github.com/spacetelescope/jwst/pull/8123
Documentation updates by @hbushouse in https://github.com/spacetelescope/jwst/pull/8156
Update README to exclude Python 3.12 from supported versions. by @nden in https://github.com/spacetelescope/jwst/pull/8161

New Contributors

@izkgao made their first contribution in https://github.com/spacetelescope/jwst/pull/8123

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.13.2...1.13.3

1.13.2

4 months ago

What's Changed

JP-3248 MIRI Subarrays 390 Hz EMI bug fix 3 by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8151
reducing running time for EMICORR step by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8152
update metadata for 1.13.2 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8155

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.13.1...1.13.2

1.13.1

4 months ago

What's Changed

Fix a typo in version_commit string by @nden in https://github.com/spacetelescope/jwst/pull/8145
add unit test to confirm step and pipeline all by @braingram in https://github.com/spacetelescope/jwst/pull/8140
JP-3248: MIRI Subarrays 390 Hz EMI bug fix by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8147
JP-3248 MIRI Subarrays 390 Hz EMI bug fix 2 by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8148
update metadata for 1.13.1 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8150

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.13.0...1.13.1

1.13.0

5 months ago

What's Changed

release metadata for 1.12.5 (DMS B10.0.1) by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8010
astropy wheel is built nightly, not weekly by @pllim in https://github.com/spacetelescope/jwst/pull/8015
wipe requirements-sdp.txt on main branch by @braingram in https://github.com/spacetelescope/jwst/pull/8025
increase asdf upper pin by @braingram in https://github.com/spacetelescope/jwst/pull/8018
allow for slow github mac runners by @braingram in https://github.com/spacetelescope/jwst/pull/8013
Fix CI for 3.x now using python 3.12 and add python 3.12 tests to CI by @braingram in https://github.com/spacetelescope/jwst/pull/8032
limit regression test result search to jwst files by @braingram in https://github.com/spacetelescope/jwst/pull/8026
JP-3035: Fix computation of the photometric keywords PIXAR_* and scale resampled intensities according to actual pixel scale ratio. by @mcara in https://github.com/spacetelescope/jwst/pull/7894
drop python 3.12 support by @braingram in https://github.com/spacetelescope/jwst/pull/8042
use --props instead of --build in okify_regtests by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8031
JP-3452: Update logging in imprint step by @hbushouse in https://github.com/spacetelescope/jwst/pull/8041
JP-3442: Improve image group name construction by @mcara in https://github.com/spacetelescope/jwst/pull/8012
Add warning in README regarding python 3.12 by @tapastro in https://github.com/spacetelescope/jwst/pull/8057
JP-3458: Removing cases CI tests to be moved to STCAL. by @kmacdonald-stsci in https://github.com/spacetelescope/jwst/pull/8060
Numpy 2.0 compat: signed/unsigned conversion in context and mask utilities by @mcara in https://github.com/spacetelescope/jwst/pull/8059
JP-3451: Include zero-valued pixels in difference calculation by @tapastro in https://github.com/spacetelescope/jwst/pull/8038
JP-3426: Check WFSS background mask against input dq array by @tapastro in https://github.com/spacetelescope/jwst/pull/8070
JP-3466 Remove the CRDS PUB notices througout the documentation by @stscieisenhamer in https://github.com/spacetelescope/jwst/pull/8075
Make meta data flexible for photutils changes by @larrybradley in https://github.com/spacetelescope/jwst/pull/8066
JP-3223: Extract_2d 'slit_name' parameter fails for NRS_MSASPEC slits by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8081
JP-3469: Replace nanmedian with masked array median in ifu_autocen by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8080
JP-3456 - Replace use of scipy.signal.medfilt in outlier detection by @braingram in https://github.com/spacetelescope/jwst/pull/8033
Cube Build fix if no valid data on array by @jemorrison in https://github.com/spacetelescope/jwst/pull/8001
replace utcnow to avoid deprecation warnings in python 3.12 by @braingram in https://github.com/spacetelescope/jwst/pull/8051
Update CHANGES.rst by @hbushouse in https://github.com/spacetelescope/jwst/pull/8092
JP-3471 improve Step.spec attribute formating in docs by @braingram in https://github.com/spacetelescope/jwst/pull/8101
JP-3473: Include non_science pixels in count of excluded pixels by @tapastro in https://github.com/spacetelescope/jwst/pull/8090
Remove the use of pkg_resources by @WilliamJamieson in https://github.com/spacetelescope/jwst/pull/8095
JP-3455: Updated MIRI imager photom step by @mlibralato in https://github.com/spacetelescope/jwst/pull/8096
JP-3455: Fix bug in new MIRI imager photom correction by @hbushouse in https://github.com/spacetelescope/jwst/pull/8102
bump stdatamodels to 1.8.4 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8105
Partially revert #8042 and add CI in order to allow Python 3.12 support. by @WilliamJamieson in https://github.com/spacetelescope/jwst/pull/8093
use PyPI upload workflow from OpenAstronomy by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7912
JP-3235: Implement NSClean step for NIRSpec 1/f noise by @hbushouse in https://github.com/spacetelescope/jwst/pull/8000
JP-3223: Extract_2d 'slit_name' parameter fails for NRS_MSASPEC slits by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8108
reorganize tests, make devdeps testing optional, unpin latest Python testing, and prepare for possibility of data caching by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/7910
Fix suffix list test for new nsclean step by @hbushouse in https://github.com/spacetelescope/jwst/pull/8111
Bump actions/labeler from 4 to 5 by @dependabot in https://github.com/spacetelescope/jwst/pull/8107
move build configuration into pyproject.toml by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/6847
JP-3357: Pathloss: Implement NIRSPEC MSA correction for slits that aren't 1x1 or 1x3 by @stscirij in https://github.com/spacetelescope/jwst/pull/8106
JP-3351: Corrections for tweakreg documentation by @mcara in https://github.com/spacetelescope/jwst/pull/8084
update labeler.yml for labeler v5 by @braingram in https://github.com/spacetelescope/jwst/pull/8117
JP-3327 Mrs spectral leak by @jemorrison in https://github.com/spacetelescope/jwst/pull/8039
JP-3485: Zero out fringe weights longward of 27.6 microns by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8119
Update stdatamodels requirement from <1.9.0,>=1.8.4 to >=1.8.4,<1.10.0 by @dependabot in https://github.com/spacetelescope/jwst/pull/8122
Pixel Replace - catch profiles with no valid pixel values by @tapastro in https://github.com/spacetelescope/jwst/pull/8120
straylight: Fix segfault on memory error in alloc_xart_arrays by @jhunkeler in https://github.com/spacetelescope/jwst/pull/8114
Update gwcs requirement from <0.20.0,>=0.19.0 to >=0.19.0,<0.21.0 by @dependabot in https://github.com/spacetelescope/jwst/pull/8121
Fix for 2 shutter uniform correction by @stscirij in https://github.com/spacetelescope/jwst/pull/8126
WIP: JP-3248 MIRI Subarrays 390 Hz EMI by @penaguerrero in https://github.com/spacetelescope/jwst/pull/7857
JP-3430: Fix filteroffset ref file doc by @hbushouse in https://github.com/spacetelescope/jwst/pull/8136
Update infrastructure files to include emicorr by @hbushouse in https://github.com/spacetelescope/jwst/pull/8137
update metadata for release 1.13.0 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8141

New Contributors

@mlibralato made their first contribution in https://github.com/spacetelescope/jwst/pull/8096

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.12.5...1.13.0

1.12.5

6 months ago

What's Changed

enable dependabot by @braingram in https://github.com/spacetelescope/jwst/pull/8004
Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/spacetelescope/jwst/pull/8007
JP-3440: Revert change clobbering extra pixels near bad reference pixels by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8005
JP-3438: Allow custom grouping of models by @mcara in https://github.com/spacetelescope/jwst/pull/7997

New Contributors

@dependabot made their first contribution in https://github.com/spacetelescope/jwst/pull/8007

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.12.4...1.12.5

1.12.4

7 months ago

What's Changed

keep cube build input models open to allow reading wcs by @braingram in https://github.com/spacetelescope/jwst/pull/7998
Fix a few Numpy 2.0 deprecation warnings by @nden in https://github.com/spacetelescope/jwst/pull/7999
Update README for B10.0 version info by @hbushouse in https://github.com/spacetelescope/jwst/pull/8002
metadata for patch release by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8006

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.12.3...1.12.4

1.12.3

7 months ago

What's Changed

JP-3433: pixel_replace doc updates by @hbushouse in https://github.com/spacetelescope/jwst/pull/7990
JP-3430: Updates for FilterOffset docs by @hbushouse in https://github.com/spacetelescope/jwst/pull/7991

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.12.2...1.12.3

1.12.2

7 months ago

What's Changed

JP-3363: Fix behavior of charge_migration step around bad pixels by @penaguerrero in https://github.com/spacetelescope/jwst/pull/7895
JP-3365: Increase MOS cutout margin by @melanieclarke in https://github.com/spacetelescope/jwst/pull/7976
JP-3431 Ensure that default WCS information is set for Guiding modes that fail pointing determination by @stscieisenhamer in https://github.com/spacetelescope/jwst/pull/7983
JP-3429: Flat error propagation by @melanieclarke in https://github.com/spacetelescope/jwst/pull/7978
MRS adjustments to straylight and 1d residual fringe routines by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/7980
JP-3350: Set all DO_NOT_USE pixels to NaN after flat field by @melanieclarke in https://github.com/spacetelescope/jwst/pull/7979

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.12.1...1.12.2