Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).
Wilcoxon test is added as an alternative to t-test and added options for a.adj methods. Also in the version 1.6.0 and possibly in 1.5.9 there was a bug in the averaging the clusters function “clust.avg.exp” that is now fixed. This was caused by a new change in CRAN rules to not use order on data frames.
KNetL map added. And minor plotting fixes.
Minor fixes in plotting functions.
Fixes to some plotting functions. Small changes in impute function and DE functions.
Anchor added. Some bug fixes.
Batch correction using MNN (scran wrapper) is added. Minor changes in plotting functions! 3D UMAP
More imputation methods.
Some minor fixes for heatmap function!
A new function to demultiplex HTOs added.
Some minor fixes for gene.plot function and vdj functions.