🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
README.md from the build, because setup.py depends on this file.scipy.cluster.vq.kmeans2 with the faster function sklearn.cluster.KMeans. Thanks to @johnarevalo for providing details about the running time with both functions in PR #20.scipy.cluster.vq.kmeans with scipy.cluster.vq.kmeans2 to address
issue #10 where we learned that kmeans does not always return k centroids,
but kmeans2 does return k centroids. Thanks to @onionpork and @DennisPost10
for reporting this.Released on 2020-08-11
max_iter_harmony as a new top-level argument, in addition to the
previously exposed max_iter_kmeans. This more closely resembles the
original interface in the harmony R package. Thanks to @pinin4fjords
for pull request #8(This release was originally posted on 2020-08-11. Now, I am trying to re-post the same release again, in the hope that it gets automatically picked up by Zenodo).
Released on 2020-03-02
Fix a bug in the LISI code that sometimes causes computation to break. Thanks to @tariqdaouda for reporting it in issue #1
Fix a bug that prevents controlling the number of iterations. Thanks to @liboxun for reporting it in issue #3
Fix a bug causing slightly different results than expected. Thanks to @bli25broad for pull request #2
Add support for multiple categorical batch variables.