Globalbioticinteractions Versions Save

Features

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Improvements

• include higher taxa authorities as taxon path shortcut in Taxon Domain object in GloBI core libraries. Related to https://github.com/globalbioticinteractions/name-alignment-template/issues/18 inspired by @whitfarnum

Bug fixes

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Features

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Improvements

• support occurrenceRemarks with pattern "Collected from ..." see #956
• remove non-breaking whitespaces when parsing lat/lng pairs see #962
• add specific logging for suspicious DwC records https://github.com/BioKIC/Symbiota/issues/758

Bug fixes

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Features

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Improvements

• reduce memory use when indexing DwC-A; #949
• elton4n - towards clean shutdown of database between running commands to avoid state pollution

Bug fixes

• close DwC-A stream after processing; related to https://github.com/globalbioticinteractions/elton/issues/58

Features

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Improvements

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Bug fixes

• use tabular info from eml.xml only if a table definition is available in eml https://github.com/globalbioticinteractions/elton/issues/57

Features

• towards support for EML to index interaction data table; related to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/942#issuecomment-1830436945 @zedomel @filipi-soares

Improvements

• add support for TROPHICALLY_INTERACTS_WITH related to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/923
• support for parsing MSB:Bird-style stomach content dynamic properties [stomach cont… …ents=...]; related to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/63

Bug fixes

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Features

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Improvements

• add Accept: */* header to make grlc happy #923 fyi @tkuhn
• enable table specific index configuration

Bug fixes

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Features

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Improvements

• upgrade to globi taxon graph v0.4.5 related to https://github.com/globalbioticinteractions/globalwebdb/issues/1
• allow for multiple identifiers in wikidata taxon id resolving https://github.com/CatalogueOfLife/general/issues/100

Bug fixes

• allow for aligning occurrence-taxa resource relations in DwC-A https://github.com/globalbioticinteractions/inaturalist/issues/8
• make Zenodo metadata parser more lenient https://github.com/globalbioticinteractions/globalbioticinteractions/issues/488#issuecomment-1787448458 to avoid unexpected crashing on indexing. Related (unresolved) external data integration issue https://github.com/zenodo/zenodo/issues/2503 .

Features

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Improvements

• adapt to new Zenodo naming convention for record files access; relate… …d to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/929
• include http://rs.tdwg.org/dwc/terms/recordNumber and http://rs.tdwg.org/dwc/terms/taxonRank value on indexing DwC-A
• patch iNaturalist resource relation citation to point to iNaturalist … …observation; related to https://github.com/globalbioticinteractions/inaturalist/issues/7#issuecomment-1759887609

Bug fixes

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Features

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Improvements

• add support for "tsn:" and "TSN:" as a more intuitive ITIS taxonomic … …serial number prefix. related to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/915
• make interaction type interpretation more lenient by trimming whitesp… …aces from candidate IRIs.
• reduce logging verbosity

Bug fixes

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Features

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Improvements

• upgrade to GloBI taxon graph v0.4.1
• only process non blank eventDates
• add association patterns re: [visiting] and [caught after visiting], …
• add integration test for supporting Symbiota/NEON style associatedOcc…
  …urrences; related to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/903 @mandrewj
• add "on tree trunk of" pattern; associated with 200f6783-1ec5-4170-8a…
• [add tribe/subtribe;] (https://github.com/globalbioticinteractions/globalbioticinteractions/commit/8816b83bdda1fa9edb22f8f62c7e79b1f525acb7) https://github.com/globalbioticinteractions/nomer/issues/159 @whitfarnum
• add support for importing jsonlines to parse results from preston tw-… …stream; related to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/373

Bug fixes

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