GenomeGraphs.jl Versions Save

GenomeGraphs v0.1.0

A very first release of GenomeGraphs, with functionality for building a DeBruijn graph from paired-end reads. This is not a stable release. It may not work for all users (haven't tested Windows in particular).

Closed issues:

• Basic De-Bruijn Graph type (#1)
• Typo in Links.jl (#2)
• Error when including BioSequenceGraphs.jl (#3)
• Maybe a typo in SequenceGraph.jl (#4)
• Node merging and Edge Collapsing (#5)
• Checking the last updates (#6)
• Generating Contigs using UG and Reads (#9)
• Adversarial testing datasets: PhiX (#11)
• Error Correction (#12)
• Graph construction is currently subject to the circle problem (#13)

Merged pull requests:

• Gsoc/dbg (#8) (@ardakdemir)
• Create basic SequenceDistanceGraph and DBG building based on Arda's code (#10) (@BenJWard)
• Basic serial, in memory kmer counting (#14) (@BenJWard)
• Merge tip-clipping from GSoC into GenomeGraphs framework (#15) (@BenJWard)
• Implement draft of perfect circle resolution for the dbg constructor (#16) (@BenJWard)
• Reorganise some code into "Graphs" submodule (#17) (@BenJWard)
• Add draft of MerTools submodule (#18) (@BenJWard)
• CompatHelper: add new compat entry for "FASTX" at version "1.1" (#20) (@github-actions[bot])
• CompatHelper: add new compat entry for "ReadDatastores" at version "0.1" (#21) (@github-actions[bot])