Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Changes since the previous release:
-pid
switch) properly calculated as the number of matching residues divided by the shorter sequence length.Changes since the previous release:
Several fixes to integrate FAMSA 2 with bioconda. If you need precompiled binaries, please take a look at the previous release.
The following important changes have been introduced:
-medoidtree
switch) for ultra-scale alignments:
-gt nj
option). NOTE: Neighbour joining trees are calculated with a use of original O(N3) algorithm, thus their applicability on large sets is limited (unless they are used as subtrees with Medoid Tree heuristic),-gz
switch).macOS binary added (executables for Windows and Linux are distributed with the previous release).
Changes:
Bug-fixes:
-dist_export
mode (sequences not ordered as in input FASTA file)