A community-driven ontology for the representation of environments
Full Changelog: https://github.com/EnvironmentOntology/envo/compare/v2024-02-05...v2024-02-16
:warning: As always, the new terms will be available after a few days as they percolate through the ether :warning:
ontobot-change-agent as a GitHub action workflow by @hrshdhgd in https://github.com/EnvironmentOntology/envo/pull/1443
ontobot.yml workflow to use kgcl-java as a plugin to robot that already exists in ODK. by @hrshdhgd in https://github.com/EnvironmentOntology/envo/pull/1467
Full Changelog: https://github.com/EnvironmentOntology/envo/compare/v2023-02-13...v2024-02-05
snow and water ice #923 by @kaiiam in https://github.com/EnvironmentOntology/envo/pull/1341
Full Changelog: https://github.com/EnvironmentOntology/envo/compare/v2021-05-14...v2023-02-13
:warning: As always, the new terms will be available after a few days as they percolate through the ether :warning:
We welcome to our team our many new editors and contributors: @raissameyer - Raissa Meyer, @iwilkie - Isabella Wilkie, @meichen-liu - Meichen Liu, @laurenechan Lauren Chan, @matentzn - Nico Matentzoglu , @turbomam - Mark A. Miller, and @wdduncan - Bill Duncan (not mentioned in the last release). Thank you all for your various contributions we hope they serve your various projects well!
Our long awaited next release covering various projects ranging from plastic pollution to manufactured products to the National Microbiome Data Collaborative (NMDC) and Joint Genome Institute (JGI) contributions for metagenomic data management requested by @jagadishsc.
abandoned fishing gear acrylic paint medium acrylic paint adhesion adsorption agricultural potting mixture aqueous inkjet printer ink automatic transmission fluid biodegradation of plastic biodegradation biofouling biopolymer biota bituminous sand brake fluid chemical colorant chemically contaminated sediment cleaning agent cleanroom cloud base cloud part cloud top coastal anthropogenic litter cohesion colorant fluid cooling water debris flow following rainfall degreaser diesel exhaust diesel fuel discarded fishing gear drinking water pipeline network drinking water treatment plant dye earth-filled dam electrical switch embankment dam emissions from petroleum combustion enamel thinner entanglement of organisms in marine debris entanglement process far-infrared radiation fishing gear fishing foamed plastic food waste formation fluid fouling fountain pen ink fragmentation due to weathering fragmentation process freezing fog gasoline exhaust gasoline gel ink ghost fishing grain of snow granule of plastic foam graupel high atmospheric level hoar crystal hydraulic fluid ice fog India ink ingestion intensive care unit interstitial water lacquer leather dye litter role littering lost fishing gear low atmospheric level luminescent paint macroplastic particle manufactured plastisphere marine anthropogenic litter marine biota megaplastic particle membrane bioreactor mesoplastic particle methyl cellulose paste middle atmospheric level mid-infrared radiation mineral horizon motor oil nanoplastic particle naphtha natural plastic near-infrared radiation NSIDC blizzard oceanic transient tracer oil paint thinner oil pipeline network oil-based paint organic horizon paint thinner paper dye permanent hair dye pharmaceutical ink piece of plastic foam pipeline network plastic film plastic fragment plastic line plastic manufacturing process plastic pellet plastic production compound plastic plastisphere polluted river primer (paint) proglacial quality of a foam radioactive material resin (gum) varnish resin rock dust rubber cement saprolite shellac slurry snow crystal soil horizon soy ink stain subglacial sugarcane vinasse supercooled water droplet supraglacial surface hoar synthetic plastic synthetic polymer tailings dam tailings pond textile dye thermoplastic material thermoplasticity thermoset polymer thermosetting disposition tragacanth transient tracer tundra climate turpentine ultrasound radiation varnish vinasse vitreous enamel volume of cyanoacrylate water column water cooling weathering of plastic weathering winter blizzard WMO blizzard wood dust wood stain xanthan gum
:warning: As always, the new terms will be available after a few days as they percolate through the ether :warning:
:warning: As always, the new terms will be available after a few days as they percolate through the ether :warning:
We're happy to welcome Steven Chong and Mark Schildhauer as co-editors. Using our contribution guidelines, they'll be adding valuable cryosphere and carbon cycling terms to support their work with DataONE and related projects.
Remember, ENVO is a community resource - so please consider joining our editorial team or sending us a pull request from time to time!
xref to The Magnus Archives
water-based cloud high-elevation mountain
Bathymodiolus-dominated oceanic mussel bed water ice core
fire whirl multiple vortex tornado iceberg liquid astronomical body part
necromass cloud forest silvagenitus cloud
astronomical observatory system X-ray radiation visible spectrum radiation
aircraft public prision land use process anthropogenic ecosystem conversion process
In this long overdue release, a wide range of classes have been added in aid of ENVO's mission to support community requests and to provide a semantic brokering layer between classification standards in the Earth and environmental sciences. Highlights include:
abyssal clay accumulation of matter on aerosolised particles active agri-ecosystem management process adfreezing aerosolisation of dust agricultural land conversion process agriculture aircraft alpine tundra biome altocumulus castellanus cloud altocumulus cloud altostratus cloud anchored ice calf anthracite anthropogenic ecosystem conversion process anthropogenic generation of energy anthropogenic light pollution area of attached faunal communities area of attached Modiolus assemblages area of attached mussel assemblages area of drift ice area of pack ice area of sea ice area of seasonal sea ice astronomical observatory system atmospheric aerosolisation of dust atmospheric observatory system Bathymodiolus gill tissue material Bathymodiolus-dominated oceanic mussel bed Bathymodiolus-dominated oceanic mussel bed Bathymodiolus-dominated oceanic mussel reef benthic deep-sea mining biochar bitumous coal body of liquid branched valley glacier Calyptra habitat carbonate system of ocean water chemical energy chromodynamic energy cirrocumulus castellanus cloud cirrocumulus cloud cirrostratus cloud cirrostratus fibratus cloud cirrus castellanus cloud cirrus fibratus cloud cirrus spissatus cloud cirrus uncinus cloud cloud forest coal mining coal power plant coke colloidal suspension congelation ice in a fresh water body congelation sea ice cryopeg cumulonimbus cloud cumulus cloud dioxygen dissolved in marine water domestic building drift ice mass drifting sea ice mass ecological province elastic energy electric energy energy fast ice fire whirl flattened elevation flaw lead floating ice calf floeberg fluid astronomical body part forest floor forestry fossil fuel power plant frazil freezing of water into water ice freezing freshwater congelation ice freshwater ice friable-frozen soil frost heave frost heaving process frost-formed hummock frozen land frozen lead frozen soil gamma-ray radiation gas power station gaseous astronomical body part gel generation of energy from coal generation of energy from oil geothermal energy gill tissue material glacial surface layer velocity glacial surface layer glacier ice field glacier snout gravitational energy hard-frozen soil haze formation event haze formation process haze high-elevation mountain homogenitus cloud homomutatus cloud hydrocarbon-based environmental material hydrogel ice calf ice cave congelation ice ice lead ice surface layer iceberg infrared radiation infrasound inorganic macronutrient dissolved in ocean water intertidal ecosystem intrusion ionization energy ionizing radiation kinetic energy laboratory environment laboratory facility land conversion process land ice mass land use process landspout lignite power plant lignite liquid astronomical body part magnetic energy marine bed marine faunal bed marine mining marine observatory system mass ice flow material congelation process mechanical wave energy microwave radiation mid-elevation mountain mining mist mixed potential and kinetic energy moonmoon multiple vortex tornado mussel bed mussel gill tissue material mussel reef necromass neritic mussel bed neritic mussel reef nimbostratus cloud nuclear energy observatory system observing system ocean thermal power station oceanic mussel bed oceanic mussel reef omics observatory system opencast mining oxygen cycling pack ice mass permafrost congelation ice planned deforestation planned environmental usage process plastic-frozen soil polar mountain potential energy protected area public prision quarrying quicksand radiant energy radiation from a manufactured product radio wave radiation rain rest energy satellite imaging of a planet satellite imaging sea bed mining sea ice field sea ice hummock sea ice mass sea ice variability sea state sea surface height sea surface layer sea-ice lead shore lead silvagenitus cloud simple valley glacier solar power station sound wave energy spur stellar radiation energy stratocumulus castellanus cloud stratocumulus cloud stratus cloud sub-bitumous coal surface layer of a water body surface of an astronomical body tabular iceberg temperate mountain temperature of sea surface terrestrial ecoregion terrestrial ice calf terrestrial mining terrestrial mountain terrestrial observatory system thermal energy thermokarst formation process tidal power plant tornado tributary glacier tropical mountain two-dimensional fiat ice surface two-dimensional fiat water ice surface ultisol ultraviolet radiation UNEP-WCMC class 1 mountain UNEP-WCMC class 2 mountain UNEP-WCMC class 3 mountain UNEP-WCMC class 4 mountain UNEP-WCMC class 5 mountain UNEP-WCMC class 6 mountain UNEP-WCMC class 7 mountain usage of an environment for business usage of an environment for community and social services usage of an environment for defence usage of an environment for industry usage of an environment for infrastructure and utilities usage of an environment for recreation usage of an environment for residential activity usage of an environment for retail activity usage of an environment for transportation visible spectrum radiation from a manufactured product visible spectrum radiation water ice core water ice surface layer water-based cloud water-based rain water-body-derived ice waterspout wind wave energy X-ray radiation
:information_source: Note that the links in this note will be live after a short delay, during which they percolate through the various indexing services which harvest ENVO.
Eponyms for this release
Featured eponyms from other ontologies:
:musical_note: Recommended listening: Dune 1984 OST
In this exciting release, we have added a set of foundational classes for astrogeological semantics and planetary science, pusuant to further alignment with the relaunched SWEET ontologies, now under the coordination of the ESIP Federation. This is a further step towards bridging the OBO Foundry and Library Federation to ESIP's semantic technologies, promoting interoperation across the life- and planetary science communities. Mini-Neptunes, hot Jupiters, and mega-Earths all emerged from the protoplanetary mix which we'll continue to weave into the OBO semantic layer, along with tectonics, climates, and weather phenomena.
In addition, we celebrate the launch of the Ecological Core Ontology (ECOCORE) at the ClearEarth Hackathon with our long overdue ecosystem.
Through ECOCORE, we look forward to creating a semantic rallying point for the ecological community, as called for in workshops such as LifeWatch and EU DATs Ontology & Semantic Web for Biodiversity & Ecosystem Research. We're working closely with the recently renovated Population and Community Ontology, the Ontology of Biological Attributes, and the Neuro Behavior Ontology to build a robust and interoperating resource. More information is available here
Working in ecological semantics? Please join ECOCORE's efforts by sending an e-mail via this link.
With contributions from @jmkeil aligned with work in the LakeBase project, we have expanded and further axiomatised our lake-related hierarchies. As always, more work remains to be done, but we're happy to present a more exhaustive list of lake types and their axiomatisation to the community.
aeolian lake ammonia ice animal manure product anoxic lake astrogeological gas astrogeological ice atmospheric escape atmospheric weather bovine dairy liquid manure caldera lake carbon dioxide ice carbon monoxide ice chthonian planet circumbinary planet climate cloud formation process composted animal manure convergent plate boundary convergent tectonic movement crater lake desert planet detritus divergent plate boundary divergent tectonic movement dwarf gas planet ecosystem environmental variability feed storage space forage material formation of liquid droplets from gaseous material in an atmosphere formation of liquid droplets in an atmosphere formation of particles in an atmosphere formation of solid particles from gaseous material in an atmosphere formation of solid particles in an atmosphere fossil worm burrow fossilization of organic material gas planet giant gas planet gravitational motion heat-treated animal manure helium planet hot Jupiter hot Neptune hydrodynamic escape hypoxic lake hypoxic water ice giant ice planet ice impact crater lake impact crater impact event iron planet Karman vortex street lake with a hypoxic hypolimnion lake with an anoxic hypolimnion lake with an oxic hypolimnion landslide lake lava planet liquid aerosol manure storage space mega-Earth mesoplanet metallic material meteorite lake meteoroid meterorite impact methane ice mini-Neptune ocean planet oxic lake oxic water particle formation process photoevaporation planetesimal plant matter poultry manure proplyd protoplanet protoplanetary disk refractory astrogeological material rift zone rockslide lake rockslide process solid aerosol space weather sub-Earth super-Earth super-Jupiter tectonic lake tectonic movement tectonic plate boundary tectonic plate subduction tectonic plate transform plate boundary transform tectonic movement volatile astrogeological material weather
commit c04b9bf311dc6712f739a820cd98de2646cb0f8d Author: pbuttigieg Date: Tue Aug 22 01:47:44 2017 +0200
update Makefile, fix subset IRIs, add envoAstro export
commit 189bbc8b39868a93dc29d2abd7865c60fdb2f9f5 Author: pbuttigieg Date: Tue Aug 22 01:44:51 2017 +0200
build fix
commit b0f0c07c6185c5b9ccf7d5092e35fbe0c0aac80c Author: pbuttigieg Date: Tue Aug 22 01:36:46 2017 +0200
added more planetary classes for release
commit 62fc9d32200e4027124a0677e5b4bec08281e146 Author: pbuttigieg Date: Sat Aug 19 23:13:56 2017 +0200
added planetary semantics
commit dd6b9ae35a8af7de04573b33973e23b9ee46575b Author: pbuttigieg Date: Thu Aug 17 22:41:17 2017 +0200
closes #552
commit f8536df0f12875ff90989b2b26608bfe17b8e33f Author: Pier Luigi Buttigieg Date: Thu Aug 17 21:56:50 2017 +0200
Update README.Md
commit 0079d6d646b378fab3f6f8f3f476b6ba7682a166 Author: Pier Luigi Buttigieg Date: Thu Aug 17 21:56:03 2017 +0200
Create README.Md
commit d62a6f13e39df90d76ad2764d690be81a98bf884 Author: Pier Luigi Buttigieg Date: Thu Aug 17 21:54:03 2017 +0200
removing obsolete envo_subsets.tsv, replaced by envo_subsetTable.csv
commit 0544ec292d02ffff8a1f54ad1d64c47cff8a60ab Author: pbuttigieg Date: Thu Aug 17 20:06:24 2017 +0200
modernising and debugging report generation
commit 59ef9fa157800bf409cf85c5f72209ac10fb34d1 Author: pbuttigieg Date: Thu Aug 17 19:34:09 2017 +0200
following up on #561
commit 0be29116926ccbee8068df7702abaa832390f1bb Merge: 515926f 099f66c Author: Pier Luigi Buttigieg Date: Thu Aug 17 13:32:26 2017 -0400
Merge pull request #561 from EnvironmentOntology/marieALaporte-patch-1
add more sparql queries for export
commit 099f66c6394bd8f49a7945e2464fef499b2ca462 Author: Marie-Angélique Laporte Date: Thu Aug 17 11:23:41 2017 -0600
export envo uri as a string
commit 1ea3b64bd37578d628ae4842689e89f2db4fe3ad Author: Marie-Angélique Laporte Date: Thu Aug 17 11:22:30 2017 -0600
save envo uri as a string
commit 515926fb972740325ae1b70d674dc2d92b111913 Author: pbuttigieg Date: Thu Aug 17 19:20:40 2017 +0200
TSVifying exports in response to #561
commit f82a042c1deec29b8c2586682b099b7e5ce44a72 Author: pbuttigieg Date: Thu Aug 17 19:18:33 2017 +0200
updated catalog to remove pco bfo bridge
commit f03d6c9de75c32462ef8d63f4b9deddbd95b8879 Author: pbuttigieg Date: Thu Aug 17 19:14:14 2017 +0200
fixing build, addressing #550 and adding root fossilisation classes
commit 07fe83766fdea28b59c1522365de6959c7217bbf Author: pbuttigieg Date: Thu Aug 17 18:45:21 2017 +0200
remove PCO bridge file
commit d7add07f91ff6936e0cb9d8a157d57ec52c414dc Author: Marie-Angélique Laporte Date: Thu Aug 17 10:38:44 2017 -0600
add more sparql queries for export
consider to change the export format of the SPARQL query to TSV here: https://github.com/EnvironmentOntology/envo/blob/99a6f5c30daac88b2692aa4c7609f59f491b298f/src/envo/Makefile#L349
commit 99a6f5c30daac88b2692aa4c7609f59f491b298f Author: pbuttigieg Date: Thu Aug 17 00:56:20 2017 +0200
addressing #544
commit 689cb94f5b7cef956d524f2bfb58b89b4052135a Author: pbuttigieg Date: Thu Aug 17 00:23:39 2017 +0200
addressing #543
commit 12cf823b2b8c13dbf79ee1018b639d0146c06fc1 Author: pbuttigieg Date: Thu Aug 17 00:16:02 2017 +0200
more on tectonics for #542 and associated classes
commit f4446b5368917b15019fdc9db2d1fd8c178a249e Author: pbuttigieg Date: Wed Aug 16 21:09:22 2017 +0200
added detritus for #560
commit a4f69fe8ae5dd5ec6a1bc47563b8eacf7c2c15e6 Author: pbuttigieg Date: Wed Aug 16 17:18:45 2017 +0200
updated earthquake semantics with tectonic classes created for #542 #541
commit 00a126403753e88e121f6aa7d0ca40d81f6b9895 Author: pbuttigieg Date: Tue Aug 15 18:42:24 2017 +0200
update subsets and exports
commit 863356058778900c85ca78304588cd48efef37ce Author: pbuttigieg Date: Tue Aug 15 18:31:25 2017 +0200
Fixed JSON export thanks to @marieALaporte
commit ba88e1a32e52bcfcbece45d5816e911a48689add Author: pbuttigieg Date: Mon Aug 14 22:18:13 2017 +0200
fixed typo in rain forest synonym
commit d3a9bca51c3e6da06b869134c476284390eefab6 Author: pbuttigieg Date: Mon Aug 14 21:31:57 2017 +0200
fixed typo in Makefile
commit b706c0e334d3fff83d65071626e4f409115c4b28 Author: pbuttigieg Date: Thu Aug 10 19:52:55 2017 +0200
Axiom fix for #537
commit 77e4379260c1abf63a16082127cc0e15ca4da235 Author: pbuttigieg Date: Mon Aug 7 20:50:22 2017 +0200
Addressing #541 with tectonic semantics
commit 64879f271063216990192a137da305c22bba713f Author: pbuttigieg Date: Mon Aug 7 17:44:26 2017 +0200
addressing aerosol formation processes in #549
commit aa3a662b16f849375b997c7bfd4f37578ad36461 Author: pbuttigieg Date: Wed Aug 2 21:12:39 2017 +0200
Addressing #549 concerning atmospheric particulates
commit e20e8a5484e0d2dfba97ac3c4ede9971a5d0a1e1 Author: pbuttigieg Date: Wed Aug 2 21:10:55 2017 +0200
Addressing #549 concerning atmospheric particulates
commit cf43b0ab9901fd0805f1bbaa7f03373a35d8994b Author: pbuttigieg Date: Tue Aug 1 19:26:42 2017 +0200
more foundational semantics for climate xref #237
commit b1282f13ec1d0a5dedfc11795bda0371e09f5bc0 Author: pbuttigieg Date: Tue Aug 1 18:52:28 2017 +0200
fixing build-breaking axioms around mud
commit dc96ed0c41f001f51410a9474ef9bd17da5ac1a5 Author: pbuttigieg Date: Tue Aug 1 18:35:42 2017 +0200
Addressing #237 for foundation semantics of weather and climate
commit 74eed7fee10144233e8ebb39e3526250f606a125 Author: pbuttigieg Date: Tue Aug 1 16:01:34 2017 +0200
updated PATO import for wetlands
commit 0b5aaa6a58b83d9fee9ffa691344632e50ef1837 Author: pbuttigieg Date: Mon Jul 31 21:20:53 2017 +0200
Addressing lake-related requests: #534 #533 #546 #536 #537 #538 #539 #540
commit e911596970f2fa79478a3c6692c775552dcc7258 Author: pbuttigieg Date: Mon Jul 31 19:48:17 2017 +0200
updated pato import
commit f64cf5fa53223c485a873a2cd57a484026a339fb Author: pbuttigieg Date: Mon Jul 31 06:25:36 2017 +0200
minor syntax fixes
:information_source: Note that the links in this note will be live after a short delay, during which they percolate through the various indexing services which harvest ENVO.
Eponyms for this release
This release features a wide range of new classes and improved axiomatisation across ENVO; however, it is primarily driven by requests from
In addition, more upper-level classes from BFO have been imported to begin the restructuring of ENVO's branches for improved axiomatisation, interoperation with other OBO resources, and clarity. Users should prepare for the environmental feature branch to be markedly restructured (most individual PURLs will not be affected, only their positioning and axioms).
:warning: Dead Simple Design Patterns were used to generate classes not mentioned in this note. Work is underway to integrate reporting into future release notes.
acoustic radiation aerosol environment animal-associated environment construction process digestive tract environment dry river electromagnetic radiation 'environment associated with a fungal tissue environment associated with a plant part or small plant environment associated with an animal part or small animal environment determined by a biofilm on a fungal surface environment determined by a biofilm on a non-saline surface environment determined by a biofilm on a plant surface environment determined by a biofilm on a saline surface environment determined by a biofilm on an animal surface environment determined by a metazoan secretion environment determined by a plant substance environmental system determined by a material environmental system determined by a quality environmental system determined by an organism fecal environment fogbow fungi-associated environment glory groundwater halo highly saline water humic lake hydrometeor hypereutrophic lake hypereutrophic water hypersaline lake hypersaline water environment light emitted by lightning lithometeor lunar rainbow meteor mock community moderately saline water monochrome solar rainbow natural lake non-saline aerosol environment non-saline environment non-saline planetary subsurface environment non-saline sediment environment oceanic subsurface zone particle beam radiation particle radiation photometeor planetary subsurface environment plant-associated environment radiation rainbow reflection rainbow rhizosphere environment saline aerosol environment saline environment saline sediment environment sediment environment sediment permeated by freshwater sediment permeated by saline water single strain cell culture slightly saline water soil environment solar rainbow sterile water environment
commit b71a3f0e3ed2bb40310243e87b06fbb062ce5f8f Author: pbuttigieg Date: Mon Jul 31 04:53:03 2017 +0200
refresh
commit d79a99184bb39ac0bbc29c322241bf9664613807 Author: pbuttigieg Date: Mon Jul 31 04:22:33 2017 +0200
added obi import file
commit 6e983b546dfcabad914a2fe161b43861a5ceec8c Author: pbuttigieg Date: Mon Jul 31 04:18:34 2017 +0200
updating imports of clo obi and cesab subsets
commit ccbcc3b8355c8708cf66c6fd7b8cab07f1547b37 Author: pbuttigieg Date: Mon Jul 31 04:13:03 2017 +0200
updated ncbi imports
commit 97a57e4005aae38df0a588c6fda920c08e715ce5 Author: pbuttigieg Date: Mon Jul 31 02:51:35 2017 +0200
added envoOmics and envoEmpo to build
commit 736c977f93e5971258061d1e1f7b9f886846ad18 Author: pbuttigieg Date: Mon Jul 31 01:59:43 2017 +0200
Build fixing
commit 89ff6b5b780014afecfad6fff48529bcc70b8f9b Author: pbuttigieg Date: Mon Jul 31 01:55:21 2017 +0200
Adding ontologised EMPO terms
commit 0646390043584d34b32dfb750d0d74fb10c146fa Author: pbuttigieg Date: Fri Jul 28 00:29:22 2017 +0200
adding radiation and fixing build
commit 57a7d0c252baf1c119c745f74b176a013642d837 Author: pbuttigieg Date: Thu Jul 27 18:31:33 2017 +0200
improved representation of plant qualities in relation to biomes
commit c1251336a3c8def6a475f4e764618c0c32bc0fc9 Author: pbuttigieg Date: Wed Jul 26 21:03:40 2017 +0200
Addressing #528 #529 #530 #531 #532
commit b9ec50ff5a0ef24380159761e77f6b1d149ec777 Author: pbuttigieg Date: Tue Jul 25 15:23:36 2017 +0200
added omp import
commit bc52e775ff2dec6f18cb01abee2a996b70e651e4 Author: pbuttigieg Date: Mon Jul 24 23:10:57 2017 +0200
residual updates to envo_edit
commit 1a8f63d38ada6249a7b838a0175683787736f925 Author: pbuttigieg Date: Mon Jul 24 23:00:50 2017 +0200
removed legacy import seeds
commit 0d4365083dce72ba2ca99763d53fa5e33c9f79f2 Author: pbuttigieg Date: Mon Jul 24 22:52:28 2017 +0200
Added FAO import, residual PO import files
commit d0f1d3345621fdd7dbbb680a8a593ab98b66fc71 Author: pbuttigieg Date: Mon Jul 24 22:19:18 2017 +0200
moved PO import to ROBOT and added plant substances
commit 713da7b892651781e7be3ef4910fef2581a89dfa Author: pbuttigieg Date: Mon Jul 17 18:59:27 2017 +0200
ROBOTified PATO import
commit 900717037ffa8b355f0bc60f1470f44b2e7b3710 Author: pbuttigieg Date: Mon Jul 17 18:48:41 2017 +0200
updated BFO and PATO imports and attempting more BFO alignments
commit 49ecd757778d41616b8ba52481e2a92fb9df117e Author: pbuttigieg Date: Mon Jul 17 18:11:56 2017 +0200
Added halo
commit 87a6bfc1f89e76fa37391075c714b793d35cc99d Author: pbuttigieg Date: Mon Jul 17 18:07:31 2017 +0200
Added more rainbows and glory
commit f17d31011e514372e1b07963931532b1811bde24 Author: pbuttigieg Date: Mon Jul 17 16:57:23 2017 +0200
added xrefs for rainbow subclasses
commit a48b91b0c08d822f2dfd270dd7f7b864b725b1fd Author: pbuttigieg Date: Fri Jul 14 07:44:22 2017 +0200
wove GO processes into ecosystem level terms
commit a56e8f48b380eba0bcb46d701de9feffe2be8b08 Author: pbuttigieg Date: Fri Jul 14 06:55:17 2017 +0200
Added rainbows
commit 4f4ee34d595025f7a440c26b322ce3cb3518425c
Merge: 5cde0f9 75150fa
Author: Chris Mungall
Date: Thu Jul 13 07:38:03 2017 -0700
Merge pull request #524 from EnvironmentOntology/bfo-import
Fix bug whereby ro was used for bfo mirror
commit 75150fa50599eb9b231c79085fd510d37988eeea
Author: Chris Mungall
Date: Thu Jul 13 07:33:01 2017 -0700
actual fix for #233
commit 5cde0f9f894ce6a9620d02a778c4090d06ffe02f Author: pbuttigieg Date: Tue Jul 11 17:05:54 2017 +0200
addressing #523
commit b4590ac77b4a9ad8efbf59655f2bf298b66c114e
Author: Chris Mungall
Date: Wed Jul 5 15:18:59 2017 -0700
Fixes #521
commit 57b4cd144c5b1f2ed8629e24e46bb70e0028ff30 Author: pbuttigieg Date: Tue Jul 4 19:23:01 2017 +0200
Addressing #520
commit dd0e414d62793ed0205e601276e65e95e52f30d5 Merge: c6533c7 1251625 Author: Pier Luigi Buttigieg Date: Tue Jul 4 19:12:08 2017 +0200
Merge pull request #518 from EnvironmentOntology/pull-517-alt
Fix for weird label generation caused by pato labels
commit c6533c7354ee91c776794b3fecc2b597f042d985 Author: pbuttigieg Date: Tue Jul 4 19:00:30 2017 +0200
test cases for EMPO
commit fc5111618ddc331d695ec6a0061c24eb561d932d Author: pbuttigieg Date: Tue Jul 4 14:51:31 2017 +0200
moving special characters from labels to synonyms for ENVO:01000750
commit 02509c0ab4f844779037f778968182c72ba0e574 Merge: 16802fb d5336ad Author: Pier Luigi Buttigieg Date: Tue Jul 4 14:32:31 2017 +0200
Merge pull request #519 from EnvironmentOntology/use-robot-slme
Fix BFO import to use ROBOT.
commit d5336ad330bc6f4d53ff7d625199a5094528b357 Author: Pier Luigi Buttigieg Date: Tue Jul 4 14:29:06 2017 +0200
Labels as comments
commit 16802fb31b7366885063ed981d29a93864fb74b1 Author: pbuttigieg Date: Tue Jul 4 14:25:03 2017 +0200
axiom fix
commit 1574dd43a0860d650187a35c667355a47ebce900 Author: pbuttigieg Date: Sat Jul 1 12:48:28 2017 +0200
improving hierarchies of enviromental systems and anthropogenic entities
commit 81e195d04b81dfb727112653a666bc5a9de44dac
Author: Chris Mungall
Date: Thu Jun 29 12:25:19 2017 -0700
fixed extract modules to use robot
commit 10345acdebd3d953f45f8daab6a9840bf85b9504
Author: Chris Mungall
Date: Thu Jun 29 08:55:25 2017 -0700
Fix BFO import to use ROBOT. Fixes #233
commit e9f1b5e02e58afaef6cec4311e46e0115eb81985 Author: pbuttigieg Date: Thu Jun 29 17:16:20 2017 +0200
removing residual files
commit 054c71589a48cf36965c2860e81d5f51ddc33cb9 Author: pbuttigieg Date: Thu Jun 29 17:06:17 2017 +0200
addressing #490
commit 2a538fc7de7fdafc14ee54ffa62c822974b18f97 Author: pbuttigieg Date: Thu Jun 29 16:36:12 2017 +0200
obsoleted confusing class "dry river" and replaced with river channel
commit 1251625fa16580e06d29756d2e47ae2a5844a01a
Author: Chris Mungall
Date: Wed Jun 28 16:48:43 2017 -0700
Removing files no longer used (compilation is direct from csv to owl now)
commit 4108c4e33621d955d643a894f3097b2cfcad0ddd
Author: Chris Mungall
Date: Wed Jun 28 16:46:07 2017 -0700
regenerated, see #577
commit b10b2a88d1437146e3034f9bece61eaf0c02848a
Author: Chris Mungall
Date: Wed Jun 28 16:42:41 2017 -0700
Overriding the label for PATO relational qualities since these
don't play with the design pattern lexical generation rules.
This isn't an ideal solution, as we are effectively maintaining
our own lexical variant of PATO. Currently regexes are being worked
into the DOSDP framework
See https://github.com/INCATools/dosdp-tools/issues/21
Once this is mature we can return to this
(Also the PATO naming is just weird... my fault)
commit 6ffcea78ce1380093257af565ec1e150818cb3ab Author: pbuttigieg Date: Wed Jun 28 11:11:25 2017 +0200
added CESAB subset files
commit 785cef7ed0b2e1bc4cbe9474460f9b606734a0c8 Author: pbuttigieg Date: Wed Jun 28 11:03:39 2017 +0200
created subset for cesab purposes
Release notes will be added in the next few days. Stay tuned!