DiffEqJump.jl Versions Save

Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)

v9.11.1

1 month ago

JumpProcesses v9.11.1

Diff since v9.11.0

Merged pull requests:

  • use SII.finalize_parameters_hook! when updating problems (#409) (@isaacsas)
  • Fix test warnings (#411) (@isaacsas)

Closed issues:

  • figure out why CI is now taking a ridiculous amount of time (#410)

v9.11.0

1 month ago

JumpProcesses v9.11.0

Diff since v9.10.1

Merged pull requests:

  • Juliacon2023 Revisions (#373) (@gzagatti)
  • Ambiguity fix (#385) (@isaacsas)
  • Juliacon2023 Latex Dependencies (#391) (@gzagatti)
  • Bump crate-ci/typos from 1.16.23 to 1.17.0 (#393) (@dependabot[bot])
  • add references to other Julia libraries (#395) (@gzagatti)
  • Bump actions/cache from 3 to 4 (#396) (@dependabot[bot])
  • Bump crate-ci/typos from 1.17.0 to 1.18.0 (#397) (@dependabot[bot])
  • Bump codecov/codecov-action from 3 to 4 (#398) (@dependabot[bot])
  • [skip ci] Update dependabot.yml (#399) (@ArnoStrouwen)
  • ci: explicitly specify token for codecov (#400) (@thazhemadam)
  • reapply formatter (#403) (@ArnoStrouwen)
  • Complete 2nd rebuttal, fix #402 (#404) (@gzagatti)
  • Print version Juliacon 2023 paper (#406) (@gzagatti)
  • Add new reference to the JumpProcesses.jl version used for benchmark (#407) (@gzagatti)
  • Indexing fixes (#408) (@isaacsas)

Closed issues:

  • possible interpolation bug in hybrid systems (#361)
  • Remarks about paper [JuliaCon Proceedings review] (#369)
  • Remarks about package [JuliaCon Proceedings review] (#370)
  • Remarks about paper - episode 2 [JuliaCon Proceedings review] (#402)

v9.10.1

5 months ago

JumpProcesses v9.10.1

Diff since v9.10.0

Merged pull requests:

  • Update JumpProcesses documentation (#372) (@gzagatti)
  • Doc update v5 (#381) (@gzagatti)

Closed issues:

  • Remarks about docs [JuliaCon Proceedings review] (#365)

v9.10.0

5 months ago

JumpProcesses v9.10.0

Diff since v9.9.0

Merged pull requests:

  • chore: bump RecursiveArrayTools compat (#363) (@AayushSabharwal)
  • typos CI (#377) (@ArnoStrouwen)
  • Bump actions/checkout from 3 to 4 (#378) (@dependabot[bot])

v9.9.0

5 months ago

JumpProcesses v9.9.0

Diff since v9.8.0

Merged pull requests:

  • Documenter 1.0 upgrade (#352) (@ArnoStrouwen)
  • Update FormatCheck.yml (#354) (@ArnoStrouwen)
  • Revert "Documenter 1.0 upgrade" (#357) (@isaacsas)
  • Update documenter attempt 2 (#358) (@isaacsas)
  • Fix typos in docs (#366) (@gdalle)
  • Change typeof(x) <: y to x isa y (#371) (@pepijndevos)
  • Remove TreeViews (#375) (@sathvikbhagavan)

v9.8.0

7 months ago

JumpProcesses v9.8.0

Diff since v9.7.3

Merged pull requests:

  • Refactor internal functions in spatial SSAs. (#342) (@Vilin97)
  • Bracketing unit tests (#344) (@Vilin97)
  • Set up bracketing for spatial solvers. (#345) (@Vilin97)
  • Bump actions/checkout from 3 to 4 (#347) (@dependabot[bot])
  • Improve spatial tests (#348) (@Vilin97)
  • CompatHelper: bump compat for SciMLBase to 2, (keep existing compat) (#350) (@github-actions[bot])

v9.7.3

8 months ago

JumpProcesses v9.7.3

Diff since v9.7.2

Closed issues:

  • Error when simulating variable rate jump problem with OOP ODEProblem (#321)
  • Coevolve can call urate with a time beyond the time span (#330)
  • Efficency of ExtendedJumpArray broadcasting in ode_interpolant (#335)

Merged pull requests:

  • Juliacon2023 Revision (#319) (@gzagatti)
  • Add test for Coevolve calling user-provided funcs with t beyond tspan (#331) (@gaurav-arya)
  • removes stackengine dependency (#336) (@gzagatti)
  • Adds subfig.sty (#337) (@gzagatti)
  • Juliacon2023 (#338) (@gzagatti)
  • Juliacon2023 (#339) (@gzagatti)
  • Add non-default broadcasting of ExtendedJumpArray's. (#340) (@meson800)

v9.7.2

9 months ago

JumpProcesses v9.7.2

Diff since v9.7.1

Merged pull requests:

  • Added ExtendedJumpArray dispatch for ODE_DEFAULT_NORM (#334) (@meson800)

v9.7.1

9 months ago

JumpProcesses v9.7.1

Diff since v9.7.0

Merged pull requests:

  • Docstring tweak (#332) (@isaacsas)

v9.7.0

10 months ago

JumpProcesses v9.7.0

Diff since v9.6.4

Merged pull requests:

  • CoevolveSynced (#315) (@gzagatti)
  • Allocations test fix (#328) (@isaacsas)