Deepcpg Versions Save

Deep neural networks for predicting CpG methylation

1.0.7

5 years ago

Adds support for Keras >2.2.0 and fixes minor bugs.

1.0.6

6 years ago
  • Add support for Keras 2.1.4 and Tensorflow 1.5.0.
  • Minor bug-fixes.

1.0.5

6 years ago

Uses Keras 2 as main Keras version.

1.0.4

7 years ago

Adds evaluation scripts and notebooks, improves documentation, and fixes minor bugs.

  • Adds dcpg_eval_perf.py and R markdown files for computing and visualizing performance metrics genome-wide and in annotated contexts.
  • Adds dcpg_snp.py for computing mutation effects.
  • Adds notebooks on computing mutation effects and predicting inter-cell statistics.
  • Adds documentation of DeepCpG scripts.
  • Adds integration tests.
  • Includes minor bug-fixes.

1.0.3

7 years ago

Extends dcpg_data.py, updates documentation, and fixes minor bugs.

  • Extends dcpg_data.py to support bedGraph and TSV input files.
  • Enables training on continuous methylation states.
  • Adds documentation about creating and analyzing Data.
  • Updates documentation of scripts and library.

1.0.2

7 years ago

Source code as used in the manuscript.