COBRA.jl Versions Save

COBRA v0.4.3

Diff since v0.4.2

Merged pull requests:

• Tutorials (#121) (@iManGHD)
• Tutorials (#122) (@mtefagh)
• Update Project.toml (#123) (@FH96)
• Sync develop branch (#126) (@mtefagh)
• CompatHelper: add new compat entry for "Ipopt" at version "1.1" (#127) (@github-actions[bot])
• Adding RidgeFBA source code (#129) (@FH96)
• Adding RidgeFBA test script (#130) (@FH96)
• Adding the md file for RidgeFBA tutorial (#131) (@FH96)
• Adding the Jupyter notebook file for RidgeFBA tutorial (#132) (@FH96)
• Adding RigdeFBA documentation. (#133) (@FH96)
• Develop (#134) (@mtefagh)
• Sync (#135) (@mtefagh)
• Develop (#136) (@mtefagh)
• Adding TLOF source code (#137) (@FH96)
• Adding TLOF_Preprocess source code (#138) (@FH96)
• Adding TLOF test script. (#139) (@FH96)
• The Jupyter notebook file for TLOF tutorial (#140) (@FH96)
• The md file for TLOF tutorial (#141) (@FH96)
• Adding documentation for TLOF (#142) (@FH96)
• Update functions.md (#143) (@FH96)
• TLOF (#144) (@mtefagh)
• Rename TLOF_test .jl to TLOF_test.jl (#145) (@FH96)
• Rename RidgeFBA_test .jl to RidgeFBA_test.jl (#146) (@FH96)
• Renamed some test files (#147) (@mtefagh)
• Merge pull request #147 from opencobra/develop (#148) (@mtefagh)
• Merge pull request #147 from opencobra/develop (#149) (@mtefagh)
• Update Project.toml (#150) (@mtefagh)

COBRA v0.4.2

Diff since v0.4.1

Closed issues:

• JuliaError: Exception 'The solver GLPK or GLPKMathProgInterface cannot be set using `changeCobraSolver()'. (#100)

Merged pull requests:

• CompatHelper: bump compat for "HTTP" to "1.4" (#116) (@github-actions[bot])
• Develop (#117) (@mtefagh)
• CPLEX solver (#118) (@iManGHD)
• CPLEX solver (#119) (@mtefagh)

COBRA v0.4.1

Diff since v0.3.2

Closed issues:

• Transition to MOI (#23)
• Bump version v0.3.2 (#73)
• how to update WinRPM in julia version 0.6.4 (#84)
• Bump version 0.4.0 (#108)

Merged pull requests:

• CompatHelper: bump compat for "MAT" to "0.8" (#75) (@github-actions[bot])
• change location of a HTTP GET in test code from LCSB-BioCore to opencobra (#76) (@jdesbonnet)
• CompatHelper: bump compat for "GLPK" to "0.13" (#77) (@github-actions[bot])
• Fix URL of ecoli_core_model.mat (#78) (@jdesbonnet)
• CompatHelper: bump compat for "GLPKMathProgInterface" to "0.5" (#79) (@github-actions[bot])
• Fix broken link in getTestModel.jl (#80) (@qacwnfq)
• CompatHelper: bump compat for "GLPK" to "0.14" (#81) (@github-actions[bot])
• Develop (#85) (@mtefagh)
• correct test files (ecoli model) and modify Project.toml (#86) (@farzanfarahani24)
• Modifying compatibility of dependencies (#87) (@iManGHD)
• CompatHelper: bump compat for "GLPK" to "1.0" (#88) (@github-actions[bot])
• CompatHelper: bump compat for "GLPKMathProgInterface" to "0.5" (#89) (@github-actions[bot])
• CompatHelper: bump compat for "HTTP" to "0.9" (#90) (@github-actions[bot])
• CompatHelper: bump compat for "CPLEX" to "0.9" (#91) (@github-actions[bot])
• CompatHelper: bump compat for "MAT" to "0.10" (#92) (@github-actions[bot])
• Develop (#93) (@mtefagh)
• Update Project.toml (#94) (@mtefagh)
• CompatHelper: bump compat for "MathOptInterface" to "1.1" (#95) (@github-actions[bot])
• Develop (#96) (@mtefagh)
• Merge pull request (#97) (@mtefagh)
• Merge pull request #97 from opencobra/master (#98) (@mtefagh)
• Merge pull request #98 from opencobra/develop (#99) (@mtefagh)
• Merge pull request #98 from opencobra/develop (#101) (@mtefagh)
• Merge pull request #98 from opencobra/develop (#102) (@mtefagh)
• Transition to MOI (#103) (@iManGHD)
• Merge pull request #98 from opencobra/develop (#104) (@mtefagh)
• Merge pull request #98 from opencobra/develop (#105) (@mtefagh)
• Revert "Merge pull request #98 from opencobra/develop" (#106) (@mtefagh)
• Transition to MOI (#107) (@mtefagh)
• Compatibility of SRC and Test with MOI (#110) (@iManGHD)
• Compatibility of SRC and Test with MOI (#111) (@mtefagh)
• Updating SRC and Test folder (#113) (@iManGHD)
• Compatibility of SRC and Test with MOI (#111) (#114) (@mtefagh)

COBRA v0.3.2

Diff since v0.3.1

Closed issues:

• Bump version v0.3.1 (#62)

Merged pull requests:

• CompatHelper: add new compat entry for "HTTP" at version "0.8" (#68) (@github-actions[bot])
• Requirements from CompatHelper (#71) (@laurentheirendt)
• Regular merge of develop (#72) (@laurentheirendt)

COBRA v0.3.1

Diff since v0.3.0

Closed issues:

• Info about upcoming removal of packages in the General registry (#48)
• Bump version v0.3.0 (#57)

Merged pull requests:

• Install TagBot as a GitHub Action (#59) (@JuliaTagBot)
• Bump version (#60) (@laurentheirendt)
• Regular merge of develop (#61) (@laurentheirendt)
• add compat helper (#63) (@laurentheirendt)
• Regular merge of develop (#64) (@laurentheirendt)

v0.3.0 (2019-09-27)

Diff since v0.2.0

Closed issues:

• Test code coverage submission to codecov fails for PRs (#51)
• Update the tutorials to Julia 1.0 (#49)
• Overload loadModel for new coupled model structure (#40)

Merged pull requests:

• Regular merge of develop (#56) (laurentheirendt)
• Fix deprecated syntax for Pkg.dir in docs and tests (#55) (laurentheirendt)
• Minor changes in tutorials (#54) (laurentheirendt)
• Fix matlab eval string in PALM.jl (#53) (laurentheirendt)
• Revised tutorial for julia 1.0+ (#52) (leejm516)
• change codes for julia 1.0+ (#46) (leejm516)
• Test ARTENOLIS trigger (#45) (laurentheirendt)
• Loading coupled models (#41) (laurentheirendt)
• Adding keyword to optionally use the CT in PALM (#39) (laurentheirendt)