Cellxgene Versions Save

An interactive explorer for single-cell transcriptomics data

1.2.0

4 months ago

What's Changed

  • Update frontend and backend dependencies

Full Changelog: https://github.com/chanzuckerberg/cellxgene/compare/1.1.2...v1.2.0

1.1.2

1 year ago

What's Changed

Full Changelog: https://github.com/chanzuckerberg/cellxgene/compare/1.1.1...1.1.2

1.1.1

1 year ago

What's Changed

New Contributors

Full Changelog: https://github.com/chanzuckerberg/cellxgene/compare/1.1.0...1.1.1

1.1.0

1 year ago

What's Changed

New Contributors

Full Changelog: https://github.com/chanzuckerberg/cellxgene/compare/1.0.1...v1.1.0

1.0.1

2 years ago

What's Changed

Bug Fix

Minor Changes

Full Changelog: https://github.com/chanzuckerberg/cellxgene/compare/1.0.0...1.0.1

1.0.0

2 years ago

Desktop 1.0 Release Notes

  • Updated links to documentation
  • Fixed a bug with label interactions
  • Assorted maintenance

0.19.0

2 years ago

New features

  • Python 3.9 support
  • The latest gene added appears at the top of the list of genes in Quick Gene Search
  • Updated front end package dependencies
  • Assorted maintenance

Bug fixes

  • Fixed a bug when renaming gene sets

0.18.0

2 years ago

New features

  • Introduced CLI parameter --X-approximate-distribution for users to specify the distribution of their data, and override the default heuristic determination
  • For categories with the number of labels over the number set by --max-category-items (default 1000), we now include a label that aggregates all labels over the limit instead of truncating the list of labels

Breaking changes

  • Removed support for experimental features (--experimental-annotations-ontology, --experimental-annotations-ontology-obo and --experimental-enable-reembedding)

Bug fixes

  • Fixed a bug in differential expression calculation by changing the t-test calculation to consistently assume normally distributed data, and to log data when data is not normally distributed based on a heuristic
  • Fixed a bug in --max-category-items

0.17.0

2 years ago

This release contains a new major feature: gene sets! A gene set is a list of genes. You will now be able to visualize the mean expression of a gene set and create and edit gene sets from the UI. Check out our user guide under docs for more information and how to get started.

We’ve also improved differential expression functionality. Now when you run differential expression, 2 lists will be created: one list of 50 highly expressed genes in group 1 and one list of 50 highly expressed genes in group 2.

Please note we will be deprecating Safari support with this release. Please use Chrome, Edge, or Firefox for the best experience.

0.16.8

3 years ago

Summary: There were two packages that had major updates that caused incompatibility issues with cellxgene: flatbuffers and Flask. In this release, we have pinned both packages to be below the latest 2.0 versions to avoid these incompatibilities (issue #2197).