Bluegenes Versions Save

• Update results table with expanded export modal functionality to support wider range of formats, preview and modifying contents

https://clojars.org/org.intermine/bluegenes/versions/1.4.5 https://hub.docker.com/layers/intermine/bluegenes/1.4.5/images/sha256-dbcd74a8cb89223a9ea0416cf912dc2ab97958c3ce7eb13af06e2ecfc91b55a4?context=explore

• Update Google Analytics from Universal Tracking (will be phased out July 2023) to GA4

https://clojars.org/org.intermine/bluegenes/versions/1.4.4 https://hub.docker.com/layers/bluegenes/intermine/bluegenes/1.4.4/images/sha256-a2aa441695a98aa93ab10db1aa916dee2ad80ed1160bee66c00f739506ab3a62?context=explore

• Handle constraining attributes of type boolean
• Allow constraining with custom value when possible values
• Fix unable to set idresolver options when linking in
• Display tabs on templates when public or owned by user
• Make list authorized/public tabs both visible, and fix filtering
• Homepage templates: Fallback if none are ranked
• Collapse the arrows in homepage template names
• Only enable oauth login when on default mine
• Use summaryfields when displaying search result attributes
• Report page: Do not use attribute of ref/coll of class for title
• Update to result tables
  • Make column summary shorter in height to avoid buttons ending up off-screen on smaller monitors
  • Make cell an external link if it's a URL

https://clojars.org/org.intermine/bluegenes/versions/1.4.3 https://hub.docker.com/layers/bluegenes/intermine/bluegenes/1.4.3/images/sha256-d1fa5cc5ac50d4a1643d4d56b2d29aabca7aebc22e1ff6a152d989f6c692cf45?context=explore

• Make mine logo and name prominent in header, moving Bluegenes logo to the credits section at the bottom of the home page
• Ensure template constraints are removed from template queries displayed on report pages
• Reduce p-value exponential decimal places to 2 on enrichment results displayed on results page
• Improve support for HTTP clients using POST portal.do
• Fix incorrect counts when saving a list from some templates or custom query results #797
  • This would also lead to additional items in the saved list, not present in the original result table
  • These additional items would also be passed onto visualisation tools

https://clojars.org/org.intermine/bluegenes/versions/1.4.2 https://hub.docker.com/layers/bluegenes/intermine/bluegenes/1.4.2/images/sha256-237057760b4335213fb5610fdc95d5fe4453e56222d0a958fec01a00dccbcf57?context=explore

• Fix various crashes that occur when connected to a mine without any preferredbagtypes in model

https://clojars.org/org.intermine/bluegenes/versions/1.4.1 https://hub.docker.com/layers/intermine/bluegenes/1.4.1/images/sha256-a9f76ee7683d908f7f7e10d43a9ef327ae1aa2a8a6fc8061c5c50d0bcc18a4d4?context=explore

• Improvements and bugfixes for query builder
  • Use displayName for classes in Data Browser
  • More clearly convey empty classes in Data Browser
  • Do not show empty classes in QB root class dropdown
  • Distinguish reverse references by showing them top of list with an arrow
  • Fix outer join not being removed when class with it is removed from view
  • Fix crash caused by adding or summarising descendent of class with type/subclass constraint
  • Rename Summary buttons to Add summary
• Open first extant tab in upload page save step when matches tab isn't present
• Make Back To Template button visible on results page after running template, return to templates page with the template still active
• Autofocus search input on search page
• Add clear button to region search page
• Re-introduce old portal.do linking in API for directly opening upload page with specified IDs resolved

https://clojars.org/org.intermine/bluegenes/versions/1.4.0 https://hub.docker.com/layers/intermine/bluegenes/1.4.0/images/sha256-972eda31eec03ca50a04ab28e85c8e0320e13827bfae5b00c06dce286723db96?context=explore

Tool API release - this release will allow users to include Javascript-based tools in report pages.

For more info, see the Tool API documentation: https://github.com/intermine/bluegenes/blob/dev/tools/docs/tools.md

Alpha release, some known issues but no egregious bugs. Suitable for testing with any mine greater than 1.7.1.

There may be additional bugfix point releases over the next few weeks but no new features will be added.

Important note: RedGenes is suitable for use with any InterMine that uses InterMine version 1.7.1 or greater https://github.com/intermine/intermine/releases/tag/intermine-1.7.1 - InterMines using 1.7 or earlier do not contain a critical bugfix https://github.com/intermine/intermine/issues/1482 that prevents certain queries from breaking lists.