What's Changed

• add codecov token by @K-Meech in https://github.com/brainglobe/brainglobe-atlasapi/pull/269
• run CI on both types of Mac by @alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/272
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainglobe-atlasapi/pull/278
• Fixes to Perens and Kim mouse atlases by @viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/271
• Fix orientation issue in perens lsfm atlas by @adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/283
• Minor fixes to the atlas update workflow by @adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/287
• Update use of brainio to brainglobe-utils by @adamltyson in https://github.com/brainglobe/brainglobe-atlasapi/pull/288

New Contributors

• @K-Meech made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/269

Full Changelog: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.5...v2.0.6

What's Changed

• restore entrypoint by @alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/264
• add two simple additional validation functions by @alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/261

Full Changelog: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.4...v2.0.5

Dependency Updates

Removes unused brainio dependency and removes duplicate entries that are present in pyproject.toml.

What's Changed

• Remove duplicate dependencies in pyproject by @willGraham01 in https://github.com/brainglobe/brainglobe-atlasapi/pull/258

Full Changelog: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.3...v2.0.4

Removes brainglobe-utils circular dependency

Removes this package's un-necessary dependency on brainglobe-utils by retiring a function that is no longer in use across the BrainGlobe tool-suite.

What's Changed

• remove load_labelled_volume by @alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/257

Full Changelog: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.2...v2.0.3

What's Changed

• testing and fixing outdated atlas generation scripts by @viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/249
• Fixed broken link in the add atlas readme. by @PolarBean in https://github.com/brainglobe/brainglobe-atlasapi/pull/252
• Fixing princeton_mouse atlas mesh by @viktorpm in https://github.com/brainglobe/brainglobe-atlasapi/pull/253
• fix metadata key by @alessandrofelder in https://github.com/brainglobe/brainglobe-atlasapi/pull/255

New Contributors

• @viktorpm made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/249
• @PolarBean made their first contribution in https://github.com/brainglobe/brainglobe-atlasapi/pull/252

Full Changelog: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.1...v2.0.2

Patch unnecessary brainglobe-utils dependency

The package metadata was fetching brainglobe-utils, however this package does not depend on it.

What's Changed

• Remove brainglobe-utils dependency that we don't need nor use by @willGraham01 in https://github.com/brainglobe/brainglobe-atlasapi/pull/248

Full Changelog: https://github.com/brainglobe/brainglobe-atlasapi/compare/v2.0.0...v2.0.1

Rename and merge with bg-atlasgen

This package will be merging with bg-atlasgen, and then renaming to brainglobe-atlasapi for consistency with other BrainGlobe tools. See https://github.com/brainglobe/BrainGlobe/issues/43 for details.

What's Changed

• Add CITATION.cff by @willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/192
• Update test_and_deploy.yml by @alessandrofelder in https://github.com/brainglobe/bg-atlasapi/pull/194
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/195
• Add check manifest to CI by @willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/196
• Add PyArrow as dependency by @willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/197
• Prepare for merge and rename by @willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/198

New Contributors

• @alessandrofelder made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/194

Full Changelog: https://github.com/brainglobe/bg-atlasapi/compare/v1.0.3...v1.0.4

Bump to brainglobe-space dependency

What's Changed

• update travis by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/79
• Update testing by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/80
• Update readme by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/84
• Updating pbar and a couple other things by @FedeClaudi in https://github.com/brainglobe/bg-atlasapi/pull/87
• Remove auto-print upon BrainGlobeAtlas construction by @nickdelgrosso in https://github.com/brainglobe/bg-atlasapi/pull/89
• Atlas metadata print out by @FedeClaudi in https://github.com/brainglobe/bg-atlasapi/pull/91
• Add osten mouse atlas to readme by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/93
• Move to GitHub actions by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/95
• Create code of conduct by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/97
• List all available atlases and their versions in machine-readable format (2) by @nickdelgrosso in https://github.com/brainglobe/bg-atlasapi/pull/101
• Fix linting problems, and test on PR by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/102
• Fix NumPy future warning on get structure mask by @seankmartin in https://github.com/brainglobe/bg-atlasapi/pull/106
• moved print to BrainGlobeAtlas by @vigji in https://github.com/brainglobe/bg-atlasapi/pull/108
• Changes to config file location by @chrisroat in https://github.com/brainglobe/bg-atlasapi/pull/111
• Optimize get_structure_mask for structures with many children by @sdiebolt in https://github.com/brainglobe/bg-atlasapi/pull/120
• Lint setup fix by @vigji in https://github.com/brainglobe/bg-atlasapi/pull/122
• Fix the - in requirements by @paddyroddy in https://github.com/brainglobe/bg-atlasapi/pull/124
• Allow -h and --help for help by @paddyroddy in https://github.com/brainglobe/bg-atlasapi/pull/125
• Add an optional attribute to handle updates during atlas downloads by @yoda-vid in https://github.com/brainglobe/bg-atlasapi/pull/126
• Align with other BG packages by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/127
• Tutorial notebook improvements by @raacampbell in https://github.com/brainglobe/bg-atlasapi/pull/128
• Add new atlas by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/133
• Update supported Python versions by @dstansby in https://github.com/brainglobe/bg-atlasapi/pull/135
• Replace brainglobe with NI actions by @dstansby in https://github.com/brainglobe/bg-atlasapi/pull/137
• Use standard pre-commit config by @dstansby in https://github.com/brainglobe/bg-atlasapi/pull/138
• Switch to pyproject.toml by @dstansby in https://github.com/brainglobe/bg-atlasapi/pull/139
• Error on warnings raised in tests by @dstansby in https://github.com/brainglobe/bg-atlasapi/pull/140
• Turn off codecov comments by @dstansby in https://github.com/brainglobe/bg-atlasapi/pull/145
• Build wheel when building package by @dstansby in https://github.com/brainglobe/bg-atlasapi/pull/144
• Typo fixes by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/151
• Update links by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/152
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/153
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/154
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/155
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/156
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/158
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/159
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/160
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/162
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/164
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/165
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/166
• Set pre-commit autoupdate frequency to monthly by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/167
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/168
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/171
• Fix download progress bar by @IgorTatarnikov in https://github.com/brainglobe/bg-atlasapi/pull/178
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/181
• Remove banner image by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/185
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/186
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/bg-atlasapi/pull/188
• Add citation info by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/189
• Various housekeeping by @adamltyson in https://github.com/brainglobe/bg-atlasapi/pull/190
• Bump to brainglobe space by @willGraham01 in https://github.com/brainglobe/bg-atlasapi/pull/191

New Contributors

• @nickdelgrosso made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/89
• @seankmartin made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/106
• @chrisroat made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/111
• @sdiebolt made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/120
• @yoda-vid made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/126
• @raacampbell made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/128
• @dstansby made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/135
• @pre-commit-ci made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/153
• @IgorTatarnikov made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/178
• @willGraham01 made their first contribution in https://github.com/brainglobe/bg-atlasapi/pull/191

Full Changelog: https://github.com/brainglobe/bg-atlasapi/compare/v1.0.0...v1.0.3

Initial public release.