Axondeepseg Versions Save

Release notes and Changelog

Release notes and Changelog

Release notes and Changelog

Release notes and Changelog

• Add FSLeyes plugin
• Shifted AxonDeepSeg from TensorFlow to Keras framework.
• Refractored data augmentation to use Albumentation library.
• Cleaned jupyter notebooks and reduced from 13 notebooks to 5.
• Switched to Dice Loss from Categorical Cross Entropy as loss function.
• Updated SEM and TEM models for better performance.
• Upgraded CUDA to 10.0 and tensorflow to 1.13.1.
• Resolve image rescale warnings
• Handle exception for images smaller than minimum patch size after resizing
• Revert tensorflow requirekment to 1.3.0 and remove tifffile requirement
• Remove matplotlib.pyplot from source code and refactor to full OO plotting
• Standardize path management to pathlib library
• Shifted AxonDeepSeg from TensorFlow to Keras framework.
• Upgraded CUDA to 10.0 and tensorflow to 1.13.1.

– Fixed bug that would crash when user inputed consent for Sentry tracking

– Upgraded ADS for Python 3.6-compatibility (no longer supporting Python 2.7) – Minor changes to make ADS Windows-compatibile – Removed plot hold commands (deprecated)

Improvements

– Minor Mac OSX-related bug fix – Changed installation requirements to exact release versions

Versions 1.x will remain Python 2.7-compatible

What's new:

• Comprehensive testing suite
• Bug tracking (Sentry)
• Blue-red visualisation function for segmented masks

Improvements:

• Dataset building and training notebook
• Minor documentation improvements
• Minor bug fixes