Advanced Normalization Tools (ANTs)
This release fixes a bug that caused Atropos to fail when using the HistogramParzenWindows likelihood model with multiple threads.
Script fixes and updates include better support for different head sizes in antsBrainExtraction.sh
, and support for priors in BIDS format in antsCorticalThickness.sh
.
The docker image is also updated (thanks @jennydaman) for improved performance and compatibility with different hardware architectures.
Update: added binaries for Apple Silicon with Mac OS 14.
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.5.0...v2.5.1
ANTSPATH
is no longer required for ANTs scripts. We now defer to PATH
for ANTs binaries and scripts. Thanks to @ghisvail for this fix.
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.4...v2.5.0
Mostly computational updates, the big one is the addition of Windows binaries. Links to PRs below. Some highlights
v
to version by @DimitriPapadopoulos in https://github.com/ANTsX/ANTs/pull/1504
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.3...v2.4.4
This version is configured to build with ITK 5.3.0.
Note about the sampling strategy in SyN: this release allows sparse metric sampling in SyN, eg you can use Regular
or Random
sampling in the metric. Previously, these options were silently ignored for SyN (but not for other transforms). However, user-defined random seeds are not used in SyN and BSplineSyN. Fixing this required an ITK change and will be resolved in the next release. The default in all ANTs scripts is to use dense sampling in SyN / BSplineSyN, which are not affected.
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.2...v2.4.3
antsRegistration
to fail unless --float
was usedFull Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.1...v2.4.2
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.0...v2.4.1
Highlights (see full list of PRs below)
Bug fixes:
New features:
antsMotionCorr
to have mm or vox units, change defaults to vox for consistency with antsRegistration
(#1350).Code and documentation:
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.3.5...v2.4.0
Update 2022-04-23: Github has disabled the unencrypted git:// protocol. To compile this and previous releases as superbuilds, you must set the Git protocol to https with the cmake option ANTS_USE_GIT_PROTOCOL to OFF.
Bug fixes:
New features:
Code and documentation:
New features:
Bug fixes:
Code and documentation:
This release contains a bug in antsRegistrationSyN.sh that is fixed in the 2.3.4 release.