Spatial Single Cell Analysis in Python
Tools for computational pathology
DANCE: a deep learning library and benchmark platform for single-cell an...
Spatial-eXpression-R: Cell type identification (including cell type mixt...
SpaGCN: Integrating gene expression, spatial location and histology to i...
R toolkit for inference, visualization and analysis of cell-cell communi...
Haplotype-aware CNV analysis from single-cell RNA-seq
Bayesian Segmentation of Spatial Transcriptomics Data
Finding surprising needles (=genes) in haystacks (=single cell transcrip...
From geospatial to spatial -omics
Pipeline for processing spatially-resolved gene counts with spatial coor...
Interactive software tool for the assignment of cell types in single-cel...